9Y62 | pdb_00009y62

Human DNA polymerase beta crosslinked ternary complex with Sp-dCTP-alpha-S

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth T]	DNA (5'-D(PCPCPGPAPCPGPGPCPGPCPAPTPCPAPGPC)-3')	-	-	-
C [auth P]	DNA (5'-D(GPCPTPGPAPTPGPCPGPC)-3')	-	-	-
B [auth D]	DNA (5'-D(GPTPCPGP*G)-3')	-	-	-
A	DNA polymerase beta	catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity DNA binding binding damaged DNA binding nucleic acid binding DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity DNA binding binding damaged DNA binding nucleic acid binding DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups cytoskeletal protein binding microtubule binding protein binding tubulin binding DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity DNA nuclease activity DNA endonuclease activity nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity enzyme binding cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process pyrimidine dimer repair DNA repair response to alcohol response to chemical response to oxygen-containing compound response to ethanol base-excision repair response to ionizing radiation response to radiation response to abiotic stimulus response to gamma radiation base-excision repair, gap-filling regulation of cellular process regulation of cellular response to stress regulation of primary metabolic process regulation of response to stress regulation of nucleobase-containing compound metabolic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of DNA repair regulation of response to stimulus regulation of metabolic process regulation of DNA metabolic process double-strand break repair double-strand break repair via nonhomologous end joining response to oxygen levels response to hyperoxia response to increased oxygen levels	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex polymeric cytoskeletal fiber spindle intracellular membraneless organelle spindle microtubule cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton site of DNA damage chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037160	DNA polymerase, thumb domain superfamily	Homologous Superfamily
A	IPR010996	Crossover junction endonuclease MUS81-like, HHH domain	Domain
A	IPR019843	DNA polymerase family X, binding site	Binding Site
A	IPR029398	DNA polymerase beta, thumb domain	Domain
A	IPR002008	DNA polymerase family X, beta-like	Family
A	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
A	IPR027421	DNA polymerase lambda lyase domain superfamily	Homologous Superfamily
A	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	Domain
A	IPR028207	DNA polymerase beta, palm domain	Domain
A	IPR022312	DNA polymerase family X	Family
A	IPR018944	DNA polymerase lambda, fingers domain	Domain
A	IPR002054	DNA-directed DNA polymerase X	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P06746	B-cell chronic lymphocytic leukemia malignant colon neoplasm urinary bladder cancer diabetes mellitus gastric carcinoma invasive ductal breast carcinoma ovarian cancer psoriasis urinary bladder neoplasm benign colon neoplasm exocrine pancreatic carcinoma glioblastoma peripheral nervous system disease subependymal giant cell astrocytoma colonic neoplasm B-cell chronic lymphocytic leukemia malignant colon neoplasm urinary bladder cancer diabetes mellitus gastric carcinoma invasive ductal breast carcinoma ovarian cancer psoriasis urinary bladder neoplasm benign colon neoplasm exocrine pancreatic carcinoma glioblastoma peripheral nervous system disease subependymal giant cell astrocytoma colonic neoplasm gastric cancer hepatocellular carcinoma malignant pancreatic neoplasm peripheral neuropathy

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.