9XZG | pdb_00009xzg

Cryo-EM structure of ALK in complex with CRBN/DDB1 and TRI-611

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	Protein cereblon	protein binding binding transmembrane transporter binding cation binding ion binding metal ion binding small molecule binding	regulation of localization regulation of biological process regulation of cellular process transport regulation of transport negative regulation of monoatomic ion transport regulation of monoatomic ion transport monoatomic ion transmembrane transport biological regulation negative regulation of biological process negative regulation of transport regulation of monoatomic ion transmembrane transport establishment of localization negative regulation of transmembrane transport transmembrane transport regulation of localization regulation of biological process regulation of cellular process transport regulation of transport negative regulation of monoatomic ion transport regulation of monoatomic ion transport monoatomic ion transmembrane transport biological regulation negative regulation of biological process negative regulation of transport regulation of monoatomic ion transmembrane transport establishment of localization negative regulation of transmembrane transport transmembrane transport localization regulation of transmembrane transport negative regulation of monoatomic ion transmembrane transport negative regulation of cellular process monoatomic ion transport cellular process developmental process multicellular organism development multicellular organismal process limb development appendage development anatomical structure development animal gross anatomical part developmental process cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of Wnt signaling pathway signal transduction Wnt signaling pathway positive regulation of cellular process regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling positive regulation of cellular component organization regulation of cellular component organization protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component organization cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal negative regulation of cellular component organization negative regulation of protein-containing complex assembly catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process behavior locomotory behavior exploration behavior locomotory exploration behavior	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul4-RING E3 ubiquitin ligase complex transferase complex intracellular protein-containing complex Cul4A-RING E3 ubiquitin ligase complex cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul4-RING E3 ubiquitin ligase complex transferase complex intracellular protein-containing complex Cul4A-RING E3 ubiquitin ligase complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B [auth C]	ALK tyrosine kinase receptor	protein tyrosine kinase activator activity enzyme regulator activity kinase activator activity enzyme activator activity receptor signaling protein tyrosine kinase activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity protein tyrosine kinase activator activity enzyme regulator activity kinase activator activity enzyme activator activity receptor signaling protein tyrosine kinase activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding heparin binding glycosaminoglycan binding sulfur compound binding identical protein binding protein binding	protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein modification process multicellular organismal process multicellular organismal-level homeostasis homeostatic process energy homeostasis regulation of biological process regulation of cellular process regulation of apoptotic process biological regulation apoptotic process regulation of programmed cell death cell death programmed cell death cellular response to stimulus response to stimulus signaling signal transduction cell communication developmental process regulation of developmental process cellular developmental process regulation of cell differentiation nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development animal gross anatomical part developmental process regulation of neuron differentiation system development cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization positive regulation of developmental process dendrite development positive regulation of neuron projection development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process plasma membrane bounded cell projection organization regulation of cell projection organization positive regulation of dendrite development regulation of dendrite development neuron development regulation of plasma membrane bounded cell projection organization cell population proliferation regulation of cell population proliferation negative regulation of catabolic process lipid catabolic process catabolic process regulation of lipid metabolic process negative regulation of metabolic process negative regulation of biological process regulation of catabolic process regulation of lipid catabolic process regulation of primary metabolic process negative regulation of cellular process regulation of metabolic process negative regulation of lipid metabolic process negative regulation of lipid catabolic process lipid metabolic process	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell periphery plasma membrane membrane protein-containing complex signaling receptor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR015947	PUA-like superfamily	Homologous Superfamily
A [auth B]	IPR046336	Lon protease, N-terminal domain superfamily	Homologous Superfamily
A [auth B]	IPR004910	Yippee/Mis18/Cereblon	Domain
A [auth B]	IPR003111	Lon protease, N-terminal domain	Domain
A [auth B]	IPR034750	CULT domain	Domain
B [auth C]	IPR017441	Protein kinase, ATP binding site	Binding Site
B [auth C]	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
B [auth C]	IPR055163	ALK/LTK-like, glycine-rich domain	Domain
B [auth C]	IPR008266	Tyrosine-protein kinase, active site	Active Site
B [auth C]	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
B [auth C]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B [auth C]	IPR000998	MAM domain	Domain
B [auth C]	IPR000719	Protein kinase domain	Domain
B [auth C]	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
B [auth C]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
B [auth C]	IPR002011	Tyrosine-protein kinase, receptor class II, conserved site	Conserved Site
B [auth C]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B [auth C]	IPR050122	Receptor Tyrosine Kinase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B]	: Q96SW2	intellectual disability, autosomal recessive 2 plasma cell myeloma 3p- syndrome intellectual disability toxic or drug-related embryofetopathy central nervous system malformation Erythema nodosum leprosum mantle cell lymphoma non-small cell lung carcinoma follicular lymphoma large cell medulloblastoma marginal zone lymphoma osteosarcoma POEMS syndrome attention deficit hyperactivity disorder, inattentive type intellectual disability, autosomal recessive 2 plasma cell myeloma 3p- syndrome intellectual disability toxic or drug-related embryofetopathy central nervous system malformation Erythema nodosum leprosum mantle cell lymphoma non-small cell lung carcinoma follicular lymphoma large cell medulloblastoma marginal zone lymphoma osteosarcoma POEMS syndrome attention deficit hyperactivity disorder, inattentive type lung adenocarcinoma myelodysplastic syndrome ovarian cancer
B [auth C]	: Q9UM73	neuroblastoma non-small cell lung carcinoma renal cell carcinoma diffuse large B-cell lymphoma inflammatory breast carcinoma anaplastic large cell lymphoma inflammatory myofibroblastic tumor papillary renal cell carcinoma pulmonary plasma cell granuloma sarcomatoid renal cell carcinoma lung cancer Neoplasm Metastasis brain cancer neuroblastoma, susceptibility to, 3 breast cancer neuroblastoma non-small cell lung carcinoma renal cell carcinoma diffuse large B-cell lymphoma inflammatory breast carcinoma anaplastic large cell lymphoma inflammatory myofibroblastic tumor papillary renal cell carcinoma pulmonary plasma cell granuloma sarcomatoid renal cell carcinoma lung cancer Neoplasm Metastasis brain cancer neuroblastoma, susceptibility to, 3 breast cancer collecting duct carcinoma chromophobe renal cell carcinoma depressive disorder rhabdomyosarcoma Sjogren syndrome lung adenocarcinoma squamous cell carcinoma adenocarcinoma mesenchymal cell neoplasm ALK-positive large B-cell lymphoma osteosarcoma cancer clear cell renal carcinoma cutaneous melanoma renal carcinoma skin disease thyroid gland papillary carcinoma melanoma ovarian cancer pituitary cancer dental caries glioma schizophrenia lymphoma ALK-positive anaplastic large cell lymphoma breast carcinoma ovarian serous adenocarcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.