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 9XJ5 | pdb_00009xj5

Structure of the CX3CL1.44-US28-GqiN18-scFv16 in the C-state, full chemokine domain modeled

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091232 3000473 SCOP2B (2022-06-29)
E [auth L]SCOP2B SuperfamilyInterleukin 8-like chemokines 8034324 3001955 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth L]PF00048Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)Small cytokines (intecrine/chemokine), interleukin-8 likeIncludes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. Domain
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth R]G-protein coupled receptor homolog US28
E [auth L]Processed fractalkine
antibody fragment scFv16---
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(q) subunit alpha

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth R]IPR000355Chemokine receptor familyFamily
F [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
F [auth R]IPR050119C-C chemokine receptor type 1-9-likeFamily
F [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
E [auth L]IPR001811Chemokine interleukin-8-like domainDomain
E [auth L]IPR034127CX3C chemokine domainDomain
E [auth L]IPR036048Chemokine interleukin-8-like superfamilyHomologous Superfamily
E [auth L]IPR039809Chemokine beta/gamma/deltaFamily
IPR001770G-protein, gamma subunitFamily
IPR015898G-protein, gamma subunit-like domainDomain
IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001632G-protein beta subunit-like, WD40 repeatsDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001019Guanine nucleotide binding protein, alpha subunitFamily
IPR000654G-protein alpha subunit, group QFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001019Guanine nucleotide binding protein, alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001408G-protein alpha subunit, group IFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth L]:  P78423
:  P59768
:  P62873
:  P63096