Annotations: 9WV1

Human TIM22 complex wtih substrate GGC1-sfGFP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	Tim10-like	8038514	3000385	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Tim10-like	8038514	3000385	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Tim10-like	8038514	3000385	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Tim10-like	8038514	3000385	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Tim10-like	8038514	3000385	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Tim10-like	8038514	3000385	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Tim10-like	8038513	3000385	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Tim10-like	8038513	3000385	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Tim10-like	8038513	3000385	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Tim10-like	8038513	3000385	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Tim10-like	8038513	3000385	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J	PF02953	Tim10/DDP family zinc finger (zf-Tim10_DDP)	Tim10/DDP family zinc finger	Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein Swiss:O60220. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import [1]. Members of thi ...	Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein Swiss:O60220. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import [1]. Members of this family seem to be localised to the mitochondrial intermembrane space [2].	Domain
G, H, I, M, N G, H, I, M, N, O	PF02953	Tim10/DDP family zinc finger (zf-Tim10_DDP)	Tim10/DDP family zinc finger	Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein Swiss:O60220. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import [1]. Members of thi ...	Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein Swiss:O60220. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import [1]. Members of this family seem to be localised to the mitochondrial intermembrane space [2].	Domain
D, E, F, K, L	PF02953	Tim10/DDP family zinc finger (zf-Tim10_DDP)	Tim10/DDP family zinc finger	Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein Swiss:O60220. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import [1]. Members of thi ...	Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein Swiss:O60220. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import [1]. Members of this family seem to be localised to the mitochondrial intermembrane space [2].	Domain
B	PF19712	Acylglycerol kinase C-terminal (AGK_C)	Acylglycerol kinase C-terminal	This domain corresponds to the C-terminal of mitochondrial Acylglycerol kinase (AGK, also known as MuLK) [1,2,3]. AGK is a metazoan-specific protein integrated into the mitochondrial inner membrane through a short N-terminal transmembrane domain. Thi ...	This domain corresponds to the C-terminal of mitochondrial Acylglycerol kinase (AGK, also known as MuLK) [1,2,3]. AGK is a metazoan-specific protein integrated into the mitochondrial inner membrane through a short N-terminal transmembrane domain. This large C-terminal domain is adjacent the kinase domain and it is oriented to the intermembrane space. AGK is a subunit of the human TIM22 complex which stabilises the complex and regulates the import and assembly of mitochondrial carrier proteins, a function independent of its kinase activity [1,2]. Disturbances in both functions of AGK (phospholipid metabolism and mitochondrial protein biogenesis) contribute to the pathogenesis of Sengers syndrome [1,2].	Domain
B	PF00781	Diacylglycerol kinase catalytic domain (DAGK_cat)	Diacylglycerol kinase catalytic domain	-	Family
A	PF02466	Tim17/Tim22/Tim23/Pmp24 family (Tim17)	Tim17/Tim22/Tim23/Pmp24 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	Mitochondrial import inner membrane translocase subunit Tim10 B	protein transporter activity transporter activity	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular component organization or biogenesis protein insertion into mitochondrial inner membrane mitochondrial protein import pathway mitochondrial transport mitochondrion organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex mitochondrial intermembrane space chaperone complex mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen membrane protein complex TIM22 mitochondrial import inner membrane insertion complex inner mitochondrial membrane protein complex
G, H, I, M, N G, H, I, M, N, O	Mitochondrial import inner membrane translocase subunit Tim10	unfolded protein holdase activity protein carrier activity molecular carrier activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding unfolded protein holdase activity protein carrier activity molecular carrier activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding membrane insertase activity protein-folding chaperone binding	membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane mitochondrial protein import pathway mitochondrial transport mitochondrion organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex membrane protein complex TIM22 mitochondrial import inner membrane insertion complex inner mitochondrial membrane protein complex mitochondrial intermembrane space chaperone complex mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen TIM23 mitochondrial import inner membrane translocase complex
D, E, F, K, L	Mitochondrial import inner membrane translocase subunit Tim9	unfolded protein holdase activity protein carrier activity molecular carrier activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity protein transporter activity transporter activity cation binding transition metal ion binding zinc ion binding ion binding unfolded protein holdase activity protein carrier activity molecular carrier activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity protein transporter activity transporter activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding protein-folding chaperone binding	membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane mitochondrial protein import pathway mitochondrial transport mitochondrion organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex membrane protein complex TIM22 mitochondrial import inner membrane insertion complex inner mitochondrial membrane protein complex mitochondrial intermembrane space chaperone complex mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen
C	Mitochondrial import inner membrane translocase subunit Tim29	protein-macromolecule adaptor activity molecular adaptor activity	membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane mitochondrial protein import pathway mitochondrial transport mitochondrion organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex membrane protein complex TIM22 mitochondrial import inner membrane insertion complex inner mitochondrial membrane protein complex mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen
B	Acylglycerol kinase, mitochondrial	kinase activity lipid kinase activity transferase activity ATP-dependent diacylglycerol kinase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups ceramide kinase activity acylglycerol kinase activity	glycerolipid metabolic process primary metabolic process metabolic process cellular process lipid metabolic process membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization glycerolipid metabolic process primary metabolic process metabolic process cellular process lipid metabolic process membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular component organization or biogenesis protein insertion into mitochondrial inner membrane mitochondrial protein import pathway mitochondrial transport mitochondrion organization polyol metabolic process sphingoid biosynthetic process sphingolipid biosynthetic process small molecule biosynthetic process lipid biosynthetic process sphingolipid metabolic process alcohol metabolic process diol biosynthetic process sphingosine metabolic process sphingoid metabolic process sphingosine biosynthetic process diol metabolic process biosynthetic process polyol biosynthetic process alcohol biosynthetic process small molecule metabolic process ceramide metabolic process ceramide biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex membrane protein complex TIM22 mitochondrial import inner membrane insertion complex inner mitochondrial membrane protein complex cytosol organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane cell periphery plasma membrane mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen
A	Mitochondrial import inner membrane translocase subunit Tim22	macromolecule transmembrane transporter activity protein transporter activity transmembrane protein transporter activity transporter activity transmembrane transporter activity membrane insertase activity protein carrier activity molecular carrier activity	membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane membrane organization cellular localization transport inner mitochondrial membrane organization intracellular transport establishment of localization mitochondrial membrane organization cellular component organization localization organelle organization establishment of localization in cell cellular process cellular component organization or biogenesis protein insertion into mitochondrial inner membrane mitochondrial protein import pathway mitochondrial transport mitochondrion organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex membrane protein complex TIM22 mitochondrial import inner membrane insertion complex inner mitochondrial membrane protein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J	IPR004217	Tim10-like	Domain
J	IPR050673	Mitochondrial import inner membrane translocase subunit	Family
J	IPR035427	Tim10-like domain superfamily	Homologous Superfamily
G, H, I, M, N G, H, I, M, N, O	IPR035427	Tim10-like domain superfamily	Homologous Superfamily
G, H, I, M, N G, H, I, M, N, O	IPR004217	Tim10-like	Domain
D, E, F, K, L	IPR035427	Tim10-like domain superfamily	Homologous Superfamily
D, E, F, K, L	IPR004217	Tim10-like	Domain
D, E, F, K, L	IPR050673	Mitochondrial import inner membrane translocase subunit	Family
C	IPR019322	Mitochondrial import inner membrane translocase subunit Tim29	Family
B	IPR045579	Acylglycerol kinase, C-terminal	Domain
B	IPR017438	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Homologous Superfamily
B	IPR001206	Diacylglycerol kinase, catalytic domain	Domain
B	IPR050187	Lipid Phosphate Formation and Regulation	Family
B	IPR016064	NAD kinase/diacylglycerol kinase-like domain superfamily	Homologous Superfamily
A	IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
J	: Q9Y5J6	osteosarcoma ovarian cancer
G, H, I, M, N G, H, I, M, N, O	: P62072	rhabdomyosarcoma acute myeloid leukemia Disease Models, Animal lung cancer Hodgkins lymphoma ovarian cancer Crohn disease lung adenocarcinoma
D, E, F, K, L	: Q9Y5J7	attention deficit hyperactivity disorder, inattentive type lung cancer plasma cell myeloma diabetes mellitus osteosarcoma vascular disease heart disease ovarian cancer
C	: Q9BSF4	ovarian cancer
B	: Q53H12	Sengers syndrome cataract 38 cardiomyopathy cataract Congenital total cataract peroxisomal disease intellectual disability mitochondrial DNA depletion syndrome pituitary cancer Sjogren syndrome large cell medulloblastoma ovarian cancer psoriasis
A	: Q9Y584	colorectal adenoma ovarian cancer colorectal cancer psoriasis osteosarcoma pulmonary hypertension

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.