9WFC | pdb_00009wfc

Cryo-EM structure of GGCX-MGP complex

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Matrix Gla protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding structural molecule activity extracellular matrix structural constituent structural constituent of bone	developmental process cellular developmental process cell differentiation cellular process multicellular organismal process ossification cell aggregation connective tissue development animal organ development tissue development cartilage condensation multicellular organism development anatomical structure morphogenesis skeletal system development developmental process cellular developmental process cell differentiation cellular process multicellular organismal process ossification cell aggregation connective tissue development animal organ development tissue development cartilage condensation multicellular organism development anatomical structure morphogenesis skeletal system development anatomical structure development skeletal system morphogenesis animal organ morphogenesis system development cartilage development regulation of multicellular organismal development regulation of biological process regulation of developmental process bone mineralization biological regulation regulation of biomineral tissue development regulation of bone mineralization biomineral tissue development regulation of multicellular organismal process regulation of ossification	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell periphery extracellular matrix external encapsulating structure
A	Vitamin K-dependent gamma-carboxylase	carboxy-lyase activity lyase activity catalytic activity gamma-glutamyl carboxylase activity carbon-carbon lyase activity vitamin binding binding small molecule binding	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding cell population proliferation type B pancreatic cell proliferation cellular process multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding cell population proliferation type B pancreatic cell proliferation cellular process epithelial cell proliferation macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of localization cellular localization regulation of cellular process transport modulation of chemical synaptic transmission signaling negative regulation of biological process negative regulation of transport negative regulation of neurotransmitter transport cell communication localization synaptic signaling regulation of secretion by cell secretion by cell negative regulation of secretion signal release establishment of localization in cell negative regulation of cellular process negative regulation of secretion by cell trans-synaptic signaling regulation of biological process regulation of signaling negative regulation of neurotransmitter secretion neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport export from cell cell-cell signaling neurotransmitter transport establishment of localization regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling regulation of neurotransmitter secretion anterograde trans-synaptic signaling regulation of cell communication biosynthetic process gene expression macromolecule biosynthetic process protein maturation developmental process regulation of multicellular organismal development negative regulation of bone development regulation of developmental process negative regulation of developmental process animal organ development regulation of bone development multicellular organism development skeletal system development anatomical structure development regulation of multicellular organismal process negative regulation of multicellular organismal process bone development system development cellular response to stimulus cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus vitamin K metabolic process ketone metabolic process chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis regulation of steroid biosynthetic process negative regulation of small molecule metabolic process steroid metabolic process regulation of lipid metabolic process lipid biosynthetic process negative regulation of lipid biosynthetic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of testosterone biosynthetic process small molecule metabolic process steroid biosynthetic process regulation of biosynthetic process negative regulation of steroid metabolic process negative regulation of testosterone biosynthetic process olefinic compound biosynthetic process small molecule biosynthetic process regulation of ketone biosynthetic process negative regulation of metabolic process regulation of steroid metabolic process regulation of ketone metabolic process testosterone biosynthetic process negative regulation of biosynthetic process negative regulation of steroid biosynthetic process olefinic compound metabolic process regulation of lipid biosynthetic process regulation of metabolic process ketone biosynthetic process negative regulation of lipid metabolic process lipid metabolic process	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR058704	Osteocalcin-like, C-terminal domain	Domain
B	IPR000294	Gamma-carboxyglutamic acid-rich (GLA) domain	Domain
B	IPR035972	Gamma-carboxyglutamic acid-rich (GLA) domain superfamily	Homologous Superfamily
B	IPR002384	Osteocalcin/matrix Gla protein	Family
B	IPR027118	Matrix Gla protein	Family
A	IPR011020	HTTM-like	Domain
A	IPR053935	Vitamin K-dependent gamma-carboxylase, lumenal domain	Domain
A	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
A	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A	IPR053934	HTTM domain	Domain
A	IPR007782	Vitamin K-dependent gamma-carboxylase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P08493	Keutel syndrome varicose disease Vascular Calcification carcinoma uremia sarcomatoid carcinoma large cell medulloblastoma lung adenocarcinoma malignant ependymoma medulloblastoma adrenoleukodystrophy osteoarthritis atopic eczema pancreatic ductal adenocarcinoma calciphylaxis Keutel syndrome varicose disease Vascular Calcification carcinoma uremia sarcomatoid carcinoma large cell medulloblastoma lung adenocarcinoma malignant ependymoma medulloblastoma adrenoleukodystrophy osteoarthritis atopic eczema pancreatic ductal adenocarcinoma calciphylaxis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Duchenne muscular dystrophy psoriasis glioblastoma Sjogren syndrome juvenile dermatomyositis undifferentiated carcinoma limb-girdle muscular dystrophy lung carcinoma malignant glioma mammary neoplasms, animal myopathy osteosarcoma Becker muscular dystrophy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma Emery-Dreifuss muscular dystrophy pterygium intellectual disability vitamin K deficiency hemorrhagic disease malignant colon neoplasm malignant pancreatic neoplasm adrenal cortex carcinoma non-small cell lung carcinoma ovarian cancer breast cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer gastric carcinoma interstitial lung disease ulcerative colitis
A	Pharos: P38435	vitamin K-dependent clotting factors, combined deficiency of, type 1 body skin hyperlaxity due to vitamin K-dependent coagulation factor deficiency malignant pancreatic neoplasm non-small cell lung carcinoma ovarian carcinoma prostate carcinoma astrocytic tumor tuberculosis blood coagulation disease breast carcinoma gastric cancer heart disease large cell medulloblastoma lymphoplasmacytic lymphoma medulloblastoma vitamin K-dependent clotting factors, combined deficiency of, type 1 body skin hyperlaxity due to vitamin K-dependent coagulation factor deficiency malignant pancreatic neoplasm non-small cell lung carcinoma ovarian carcinoma prostate carcinoma astrocytic tumor tuberculosis blood coagulation disease breast carcinoma gastric cancer heart disease large cell medulloblastoma lymphoplasmacytic lymphoma medulloblastoma osteosarcoma pancreatic ductal adenocarcinoma pseudoxanthoma elasticum-like skin manifestations with retinitis pigmentosa atypical teratoid rhabdoid tumor urolithiasis Blood Coagulation Disorders Ehlers-Danlos syndrome gastric carcinoma lung adenocarcinoma malignant ependymoma myocardial infarction ovarian cancer plasma cell myeloma psoriasis autosomal recessive inherited pseudoxanthoma elasticum vitamin K deficiency hemorrhagic disease exocrine pancreatic carcinoma glioblastoma invasive ductal breast carcinoma lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.