9W2Z | pdb_00009w2z

Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8035429 3000671 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit IV 8035430 3000582 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRubredoxin-like 8035432 3001257 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIa 8035433 3000592 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIc 8035437 3000598 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIb 8035440 3000613 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 8035443 3000633 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCytochrome c oxidase subunit h 8035435 3000395 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome c oxidase subunit E 8035431 3001402 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 8035441 3000624 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIa 8035438 3000606 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8035426 3000653 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
PF02936Cytochrome c oxidase subunit IV (COX4)Cytochrome c oxidase subunit IV- Family
PF01215Cytochrome c oxidase subunit Vb (COX5B)Cytochrome c oxidase subunit VbDomain
PF02046Cytochrome c oxidase subunit VIa (COX6A)Cytochrome c oxidase subunit VIa- Family
PF02937Cytochrome c oxidase subunit VIc (COX6C)Cytochrome c oxidase subunit VIc- Family
PF05392Cytochrome C oxidase chain VIIB (COX7B)Cytochrome C oxidase chain VIIB- Family
PF02285Cytochrome oxidase c subunit VIII (COX8)Cytochrome oxidase c subunit VIII- Family
PF06522NADH-ubiquinone reductase complex 1 MLRQ subunit (B12D)NADH-ubiquinone reductase complex 1 MLRQ subunit- Family
PF02297Cytochrome oxidase c subunit VIb (COX6B)Cytochrome oxidase c subunit VIbCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Domain
PF02284Cytochrome c oxidase subunit Va (COX5A)Cytochrome c oxidase subunit VaCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit Va. Domain
PF02935Cytochrome c oxidase subunit VIIc (COX7C)Cytochrome c oxidase subunit VIIcCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIIc. The yeast member of this family is called COX VIII Swiss:P040 ...Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIIc. The yeast member of this family is called COX VIII Swiss:P04039.
Domain
PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cytochrome c oxidase subunit 2
Cytochrome c oxidase subunit 3
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-
Cytochrome c oxidase subunit 5B, mitochondrial
Cytochrome c oxidase subunit 6A2, mitochondrial
Cytochrome c oxidase subunit 6C-
Cytochrome c oxidase subunit 7B, mitochondrial-
Cytochrome c oxidase subunit 8B, mitochondrial-
Cytochrome c oxidase subunit NDUFA4-
Cytochrome c oxidase subunit 6B1-
Cytochrome c oxidase subunit 5A, mitochondrial
Cytochrome c oxidase subunit 7C, mitochondrial-
Cytochrome c oxidase subunit 7A1, mitochondrial
Cytochrome c oxidase subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
IPR045187Cytochrome c/quinol oxidase subunit IIFamily
IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
IPR008972CupredoxinHomologous Superfamily
IPR001505Copper centre Cu(A)Binding Site
IPR014222Cytochrome c oxidase, subunit IIDomain
IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
IPR000298Cytochrome c oxidase subunit III-likeDomain
IPR033945Cytochrome c oxidase subunit III domainDomain
IPR024791Cytochrome c oxidase subunit IIIFamily
IPR004203Cytochrome c oxidase subunit IV familyFamily
IPR013288Cytochrome c oxidase subunit IVFamily
IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
IPR002124Cytochrome c oxidase, subunit VbFamily
IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
IPR001349Cytochrome c oxidase, subunit VIaFamily
IPR037169Mitochondrial cytochrome c oxidase subunit VIc/VIIs superfamilyHomologous Superfamily
IPR051389Cytochrome c oxidase subunit VIcFamily
IPR034884Mitochondrial cytochrome c oxidase subunit VIc/VIIsFamily
IPR023272Cytochrome C oxidase, subunit VIIB domain superfamilyHomologous Superfamily
IPR008433Cytochrome C oxidase, subunit VIIBFamily
IPR003205Cytochrome c oxidase, subunit 8Family
IPR036548Cytochrome c oxidase, subunit 8 superfamilyHomologous Superfamily
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitFamily
IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
IPR048280Cytochrome oxidase c subunit VIb-likeFamily
IPR003213Cytochrome c oxidase, subunit VIbFamily
IPR003204Cytochrome c oxidase, subunit Va/VIFamily
IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
IPR004202Cytochrome c oxidase subunit VIIcFamily
IPR003177Cytochrome c oxidase subunit VIIa, metazoaFamily
IPR036539Cytochrome c oxidase, subunit VIIa superfamilyHomologous Superfamily
IPR039297Cytochrome c oxidase subunit VIIFamily
IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
IPR000883Cytochrome c oxidase subunit IFamily
IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
IPR023616Cytochrome c oxidase-like, subunit I domainDomain
IPR033944Cytochrome c oxidase subunit I domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FME Parent Component: MET

AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891