| IPR038376 | ATP synthase, alpha subunit, C-terminal domain superfamily | Homologous Superfamily |
| IPR004100 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain | Domain |
| IPR033732 | ATP synthase, F1 complex, alpha subunit nucleotide-binding domain | Domain |
| IPR036121 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily | Homologous Superfamily |
| IPR023366 | ATP synthase subunit alpha, N-terminal domain-like superfamily | Homologous Superfamily |
| IPR000793 | ATP synthase, alpha subunit, C-terminal | Domain |
| IPR020003 | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Active Site |
| IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Domain |
| IPR005294 | ATP synthase, F1 complex, alpha subunit | Family |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
| IPR004100 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain | Domain |
| IPR024034 | ATPase, F1/V1 complex, beta/alpha subunit, C-terminal | Homologous Superfamily |
| IPR036121 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily | Homologous Superfamily |
| IPR020003 | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Active Site |
| IPR050053 | ATPase alpha/beta chains | Family |
| IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Domain |
| IPR055190 | ATP synthase A/B type, C-terminal domain | Domain |
| IPR003593 | AAA+ ATPase domain | Domain |
| IPR005722 | ATP synthase, F1 complex, beta subunit | Family |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
| IPR023632 | ATP synthase, F1 complex, gamma subunit conserved site | Conserved Site |
| IPR000131 | ATP synthase, F1 complex, gamma subunit | Family |
| IPR035968 | ATP synthase, F1 complex, gamma subunit superfamily | Homologous Superfamily |
| IPR036794 | ATP synthase delta/epsilon subunit, C-terminal domain superfamily | Homologous Superfamily |
| IPR020546 | ATP synthase, F1 complex, delta/epsilon subunit, N-terminal | Domain |
| IPR001469 | ATP synthase, F1 complex, delta/epsilon subunit | Family |
| IPR036771 | F0F1 ATP synthase delta/epsilon subunit, N-terminal | Homologous Superfamily |
| IPR048937 | F1F0-ATP synthase delta subunit, C-terminal domain, metazoan | Domain |
| IPR036742 | ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial | Homologous Superfamily |
| IPR006721 | ATP synthase, F1 complex, epsilon subunit, mitochondrial | Family |
| IPR007648 | Mitochondrial ATPase inhibitor | Family |
| K [auth S] | IPR020781 | ATPase, OSCP/delta subunit, conserved site | Conserved Site |
| K [auth S] | IPR000711 | ATPase, OSCP/delta subunit | Family |
| K [auth S] | IPR026015 | F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily | Homologous Superfamily |
| L [auth b] | IPR008688 | ATP synthase, F0 complex, subunit B/MI25 | Family |
| L [auth b] | IPR013837 | ATP synthase, F0 complex, subunit B | Family |
| M [auth d] | IPR036228 | ATP synthase, F0 complex, subunit D superfamily, mitochondrial | Homologous Superfamily |
| M [auth d] | IPR008689 | ATP synthase, F0 complex, subunit D, mitochondrial | Family |
| N [auth h] | IPR036204 | ATP synthase-coupling factor 6 superfamily, mitochondrial | Homologous Superfamily |
| N [auth h] | IPR008387 | ATP synthase-coupling factor 6, mitochondrial | Family |