9VPC | pdb_00009vpc

Cryo-EM structure of the IF1 bound bovine ATP synthase tetramer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
SC [auth 4I]SCOP2B Superfamilyepsilon subunit of mitochondrial F1F0-ATP synthase 8037353 3001799 SCOP2B (2022-06-29)
PB [auth 3I]SCOP2B Superfamilyepsilon subunit of mitochondrial F1F0-ATP synthase 8037353 3001799 SCOP2B (2022-06-29)
MA [auth 2I]SCOP2B Superfamilyepsilon subunit of mitochondrial F1F0-ATP synthase 8037353 3001799 SCOP2B (2022-06-29)
J [auth 1I]SCOP2B Superfamilyepsilon subunit of mitochondrial F1F0-ATP synthase 8037353 3001799 SCOP2B (2022-06-29)
RC [auth 4H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase C-terminal domain 8037350 3000785 SCOP2B (2022-06-29)
RC [auth 4H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase N-terminal domain 8037352 3000182 SCOP2B (2022-06-29)
OB [auth 3H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase C-terminal domain 8037350 3000785 SCOP2B (2022-06-29)
OB [auth 3H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase N-terminal domain 8037352 3000182 SCOP2B (2022-06-29)
LA [auth 2H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase C-terminal domain 8037350 3000785 SCOP2B (2022-06-29)
LA [auth 2H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase N-terminal domain 8037352 3000182 SCOP2B (2022-06-29)
I [auth 1H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase C-terminal domain 8037350 3000785 SCOP2B (2022-06-29)
I [auth 1H]SCOP2B SuperfamilyEpsilon subunit of F1F0-ATP synthase N-terminal domain 8037352 3000182 SCOP2B (2022-06-29)
QC [auth 4G]SCOP2B SuperfamilyATP synthase gamma subunit-like 8044412 3000451 SCOP2B (2022-06-29)
NB [auth 3G]SCOP2B SuperfamilyATP synthase gamma subunit-like 8044412 3000451 SCOP2B (2022-06-29)
KA [auth 2G]SCOP2B SuperfamilyATP synthase gamma subunit-like 8044412 3000451 SCOP2B (2022-06-29)
H [auth 1G]SCOP2B SuperfamilyATP synthase gamma subunit-like 8044412 3000451 SCOP2B (2022-06-29)
OC [auth 4E]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
OC [auth 4E]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
OC [auth 4E]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
PC [auth 4F]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
PC [auth 4F]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
PC [auth 4F]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
NC [auth 4D]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
NC [auth 4D]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
NC [auth 4D]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
MB [auth 3F]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
MB [auth 3F]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
MB [auth 3F]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
LB [auth 3E]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
LB [auth 3E]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
LB [auth 3E]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
KB [auth 3D]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
KB [auth 3D]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
KB [auth 3D]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
JA [auth 2F]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
JA [auth 2F]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
JA [auth 2F]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
IA [auth 2E]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
IA [auth 2E]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
IA [auth 2E]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
HA [auth 2D]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
HA [auth 2D]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
HA [auth 2D]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
G [auth 1F]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
G [auth 1F]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
G [auth 1F]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
F [auth 1E]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
F [auth 1E]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
F [auth 1E]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
E [auth 1D]SCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018258 3001034 SCOP2B (2022-06-29)
E [auth 1D]SCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056904 3000684 SCOP2B (2022-06-29)
E [auth 1D]SCOP2B SuperfamilyRecA-like P-loop NTPases 8018253 3002019 SCOP2B (2022-06-29)
ZA [auth 2d]SCOP2B SuperfamilyATP synthase D chain-like 8032774 3001647 SCOP2B (2022-06-29)
W [auth 1d]SCOP2B SuperfamilyATP synthase D chain-like 8032774 3001647 SCOP2B (2022-06-29)
FD [auth 4d]SCOP2B SuperfamilyATP synthase D chain-like 8032774 3001647 SCOP2B (2022-06-29)
CC [auth 3d]SCOP2B SuperfamilyATP synthase D chain-like 8032774 3001647 SCOP2B (2022-06-29)
YA [auth 2b]SCOP2B SuperfamilyATP synthase B chain-like 8032773 3001636 SCOP2B (2022-06-29)
V [auth 1b]SCOP2B SuperfamilyATP synthase B chain-like 8032773 3001636 SCOP2B (2022-06-29)
ED [auth 4b]SCOP2B SuperfamilyATP synthase B chain-like 8032773 3001636 SCOP2B (2022-06-29)
BC [auth 3b]SCOP2B SuperfamilyATP synthase B chain-like 8032773 3001636 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
CD [auth 4S],
T [auth 1S],
WA [auth 2S],
ZB [auth 3S]
PF00213ATP synthase delta (OSCP) subunit (OSCP)ATP synthase delta (OSCP) subunit- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
J [auth 1I],
MA [auth 2I],
PB [auth 3I],
SC [auth 4I]
PF04627Mitochondrial ATP synthase epsilon chain (ATP-synt_Eps)Mitochondrial ATP synthase epsilon chain- Family
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
PF02823ATP synthase, Delta/Epsilon chain, beta-sandwich domain (ATP-synt_DE_N)ATP synthase, Delta/Epsilon chain, beta-sandwich domainPart of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensiti ...Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (Pfam:PF00213).
Domain
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
PF21335Metazoan delta subunit of F1F0-ATP synthase, C-terminal domain (ATPD_C_metazoa)Metazoan delta subunit of F1F0-ATP synthase, C-terminal domainF-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from animals (called epsilon in bacteria or chlorop ...F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from animals (called epsilon in bacteria or chloroplast ATPase), which interacts with subunit C from F0 which is important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 C subunit). This entry represents the C-terminal alpha-helical domain which is likely to act as an inhibitor of ATPase activity [1-5].
Domain
H [auth 1G],
KA [auth 2G],
NB [auth 3G],
QC [auth 4G]
PF00231ATP synthase (ATP-synt)ATP synthaseDomain
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
PF00119ATP synthase A chain (ATP-synt_A)ATP synthase A chainDomain
PF00306ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)ATP synthase alpha/beta chain, C terminal domainDomain
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
PF05405Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B)Mitochondrial ATP synthase B chain precursor (ATP-synt_B)- Family
A [auth 18],
DA [auth 28],
GB [auth 38],
JC [auth 48]
PF00895ATP synthase protein 8 (ATP-synt_8)ATP synthase protein 8- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
CD [auth 4S],
T [auth 1S],
WA [auth 2S],
ZB [auth 3S]
ATP synthase peripheral stalk subunit OSCP, mitochondrial
ATP synthase F(0) complex subunit C2, mitochondrial
K [auth 1J],
NA [auth 2J],
QB [auth 3J],
TC [auth 4J]
ATPase inhibitor, mitochondrial
J [auth 1I],
MA [auth 2I],
PB [auth 3I],
SC [auth 4I]
ATP synthase F(1) complex subunit epsilon, mitochondrial
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
ATP synthase F(1) complex subunit delta, mitochondrial
H [auth 1G],
KA [auth 2G],
NB [auth 3G],
QC [auth 4G]
ATP synthase F(1) complex subunit gamma, mitochondrial
ATP synthase F(1) complex catalytic subunit beta, mitochondrial
ATP synthase subunit alpha
CA [auth 1k],
FB [auth 2k],
IC [auth 3k],
LD [auth 4k]
ATP synthase F(0) complex subunit k, mitochondrial- -
BA [auth 1j],
EB [auth 2j],
HC [auth 3j],
KD [auth 4j]
ATP synthase F(0) complex subunit j, mitochondrial- -
AA [auth 1h],
DB [auth 2h],
GC [auth 3h],
JD [auth 4h]
ATP synthase peripheral stalk subunit F6, mitochondrial
CB [auth 2g],
FC [auth 3g],
ID [auth 4g],
Z [auth 1g]
ATP synthase F(0) complex subunit g, mitochondrial
BB [auth 2f],
EC [auth 3f],
HD [auth 4f],
Y [auth 1f]
ATP synthase F(0) complex subunit f, mitochondrial-
AB [auth 2e],
DC [auth 3e],
GD [auth 4e],
X [auth 1e]
ATP synthase F(0) complex subunit e, mitochondrial
CC [auth 3d],
FD [auth 4d],
W [auth 1d],
ZA [auth 2d]
ATP synthase peripheral stalk subunit d, mitochondrial
BC [auth 3b],
ED [auth 4b],
V [auth 1b],
YA [auth 2b]
ATP synthase peripheral stalk subunit b, mitochondrial
AC [auth 3a],
DD [auth 4a],
U [auth 1a],
XA [auth 2a]
ATP synthase F(0) complex subunit a
A [auth 18],
DA [auth 28],
GB [auth 38],
JC [auth 48]
ATP synthase F(0) complex subunit 8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
CD [auth 4S],
T [auth 1S],
WA [auth 2S],
ZB [auth 3S]
IPR020781ATPase, OSCP/delta subunit, conserved siteConserved Site
CD [auth 4S],
T [auth 1S],
WA [auth 2S],
ZB [auth 3S]
IPR000711ATPase, OSCP/delta subunitFamily
CD [auth 4S],
T [auth 1S],
WA [auth 2S],
ZB [auth 3S]
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
K [auth 1J],
NA [auth 2J],
QB [auth 3J],
TC [auth 4J]
IPR007648Mitochondrial ATPase inhibitorFamily
J [auth 1I],
MA [auth 2I],
PB [auth 3I],
SC [auth 4I]
IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
J [auth 1I],
MA [auth 2I],
PB [auth 3I],
SC [auth 4I]
IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
IPR036794ATP synthase delta/epsilon subunit, C-terminal domain superfamilyHomologous Superfamily
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
I [auth 1H],
LA [auth 2H],
OB [auth 3H],
RC [auth 4H]
IPR048937F1F0-ATP synthase delta subunit, C-terminal domain, metazoanDomain
H [auth 1G],
KA [auth 2G],
NB [auth 3G],
QC [auth 4G]
IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
H [auth 1G],
KA [auth 2G],
NB [auth 3G],
QC [auth 4G]
IPR000131ATP synthase, F1 complex, gamma subunitFamily
H [auth 1G],
KA [auth 2G],
NB [auth 3G],
QC [auth 4G]
IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
IPR050053ATPase alpha/beta chainsFamily
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
IPR055190ATP synthase A/B type, C-terminal domainDomain
IPR003593AAA+ ATPase domainDomain
IPR005722ATP synthase, F1 complex, beta subunitFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
IPR000793ATP synthase, alpha subunit, C-terminalDomain
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
IPR005294ATP synthase, F1 complex, alpha subunitFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CA [auth 1k],
FB [auth 2k],
IC [auth 3k],
LD [auth 4k]
IPR009125ATP synthase membrane subunit KFamily
BA [auth 1j],
EB [auth 2j],
HC [auth 3j],
KD [auth 4j]
IPR012574ATP synthase subunit ATP5MJ, mitochondrialFamily
AA [auth 1h],
DB [auth 2h],
GC [auth 3h],
JD [auth 4h]
IPR036204ATP synthase-coupling factor 6 superfamily, mitochondrialHomologous Superfamily
AA [auth 1h],
DB [auth 2h],
GC [auth 3h],
JD [auth 4h]
IPR008387ATP synthase-coupling factor 6, mitochondrialFamily
CB [auth 2g],
FC [auth 3g],
ID [auth 4g],
Z [auth 1g]
IPR016702ATP synthase, F0 complex, gamma subunit, metazoaFamily
CB [auth 2g],
FC [auth 3g],
ID [auth 4g],
Z [auth 1g]
IPR006808ATP synthase F0 complex subunit G, mitochondrialFamily
BB [auth 2f],
EC [auth 3f],
HD [auth 4f],
Y [auth 1f]
IPR019344Mitochondrial F1-F0 ATP synthase subunit F, predictedFamily
AB [auth 2e],
DC [auth 3e],
GD [auth 4e],
X [auth 1e]
IPR008386ATP synthase, F0 complex, subunit E, mitochondrialFamily
CC [auth 3d],
FD [auth 4d],
W [auth 1d],
ZA [auth 2d]
IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialHomologous Superfamily
CC [auth 3d],
FD [auth 4d],
W [auth 1d],
ZA [auth 2d]
IPR008689ATP synthase, F0 complex, subunit D, mitochondrialFamily
BC [auth 3b],
ED [auth 4b],
V [auth 1b],
YA [auth 2b]
IPR008688ATP synthase, F0 complex, subunit B/MI25Family
BC [auth 3b],
ED [auth 4b],
V [auth 1b],
YA [auth 2b]
IPR013837ATP synthase, F0 complex, subunit BFamily
AC [auth 3a],
DD [auth 4a],
U [auth 1a],
XA [auth 2a]
IPR023011ATP synthase, F0 complex, subunit A, active siteActive Site
AC [auth 3a],
DD [auth 4a],
U [auth 1a],
XA [auth 2a]
IPR000568ATP synthase, F0 complex, subunit AFamily
AC [auth 3a],
DD [auth 4a],
U [auth 1a],
XA [auth 2a]
IPR035908ATP synthase, F0 complex, subunit A superfamilyHomologous Superfamily
AC [auth 3a],
DD [auth 4a],
U [auth 1a],
XA [auth 2a]
IPR045083ATP synthase, F0 complex, subunit A, bacterial/mitochondriaFamily
A [auth 18],
DA [auth 28],
GB [auth 38],
JC [auth 48]
IPR039017ATP synthase protein 8, mammalsFamily
A [auth 18],
DA [auth 28],
GB [auth 38],
JC [auth 48]
IPR001421ATP synthase F(0) complex subunit 8Family