Annotations: 9VJ8

Type II-A CRISPR integrase complex, apo form

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth S]	Sugar_tr	e9vj8S1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Sugar_tr	ECOD (v295.2)
J	ClpB_D2-small	e9vj8J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
I	Sugar_tr	e9vj8I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Sugar_tr	ECOD (v295.2)
A	Sugar_tr	e9vj8A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Sugar_tr	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
U [auth S], V [auth T]	CRISPR-associated endonuclease Cas9	DNA binding binding nucleic acid binding endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity RNA binding cation binding ion binding metal ion binding small molecule binding	maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process biological process involved in interspecies interaction between organisms maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
M, N, Q [auth U], T [auth V]	CRISPR-associated endoribonuclease Cas2	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
I, J, K, L, O, I, J, K, L, O, P, R [auth Q], S [auth R]	CRISPR-associated endonuclease Cas1	DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
A, B, C, D, E A, B, C, D, E, F, G, H	Type II-A CRISPR-associated protein Csn2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
U [auth S], V [auth T]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
U [auth S], V [auth T]	IPR032240	CRISPR-associated endonuclease Cas9, REC lobe	Domain
U [auth S], V [auth T]	IPR032239	CRISPR-associated endonuclease Cas9, bridge helix	Domain
U [auth S], V [auth T]	IPR033114	Cas9-type HNH domain	Domain
U [auth S], V [auth T]	IPR055228	Cas9, RuvC domain	Domain
U [auth S], V [auth T]	IPR028629	CRISPR-associated endonuclease Cas9	Family
U [auth S], V [auth T]	IPR003615	HNH nuclease	Domain
U [auth S], V [auth T]	IPR032237	CRISPR-associated endonuclease Cas9, PAM-interacting domain	Domain
M, N, Q [auth U], T [auth V]	IPR019199	Virulence-associated protein D / CRISPR associated protein Cas2	Family
M, N, Q [auth U], T [auth V]	IPR021127	CRISPR-associated endonuclease Cas2	Family
I, J, K, L, O, I, J, K, L, O, P, R [auth Q], S [auth R]	IPR002729	CRISPR-associated protein Cas1	Family
I, J, K, L, O, I, J, K, L, O, P, R [auth Q], S [auth R]	IPR019855	CRISPR-associated protein Cas1, NMENI subtype	Family
I, J, K, L, O, I, J, K, L, O, P, R [auth Q], S [auth R]	IPR042206	CRISPR-associated endonuclease Cas1, C-terminal domain	Homologous Superfamily
I, J, K, L, O, I, J, K, L, O, P, R [auth Q], S [auth R]	IPR050646	CRISPR-associated endonuclease Cas1	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010146	CRISPR-associated protein, Csn2-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038600	CRISPR-associated protein Csn2 superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9VJ8 | pdb_00009vj8

Type II-A CRISPR integrase complex, apo form

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage