9VBK | pdb_00009vbk

Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13918	PLD-like domain (PLDc_3)	PLD-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth F], F [auth G]	DNA (5'-D(TPTP*T)-3')	-	-	-
A, B, C, D	5'-3' exonuclease PLD4	single-stranded DNA 5'-3' DNA exonuclease activity DNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity 5'-3' DNA exonuclease activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity single-stranded DNA exodeoxyribonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity exonuclease activity	localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport multicellular organismal process regulation of cellular process response to stimulus regulation of cytokine production involved in inflammatory response response to stress cytokine production localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport multicellular organismal process regulation of cellular process response to stimulus regulation of cytokine production involved in inflammatory response response to stress cytokine production regulation of cytokine production regulation of multicellular organismal process production of molecular mediator involved in inflammatory response regulation of biosynthetic process regulation of biological process defense response biological regulation regulation of macromolecule metabolic process cytokine production involved in inflammatory response gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process inflammatory response macromolecule metabolic process regulation of metabolic process biological process involved in interspecies interaction between organisms immune response response to other organism defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus developmental process cellular developmental process hemopoiesis cell differentiation anatomical structure development cell development hematopoietic progenitor cell differentiation primary metabolic process lipid metabolic process cellular localization establishment of localization in cell	cellular anatomical structure endomembrane system membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle Golgi apparatus subcompartment cellular anatomical structure endomembrane system membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment membrane trans-Golgi network membrane trans-Golgi network organelle membrane phagocytic vesicle endocytic vesicle lytic vacuole vacuole lysosome nucleus endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050874	Diverse function phospholipase D-related protein	Family
A, B, C, D	IPR001736	Phospholipase D/Transphosphatidylase	Domain
A, B, C, D	IPR032803	PLD3/4-like, PLD-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q96BZ4	rheumatoid arthritis Liver Cirrhosis, Experimental large cell medulloblastoma osteosarcoma pilocytic astrocytoma MALT lymphoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.