9UXV | pdb_00009uxv

Crystal structure of GSDME

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04598	Gasdermin pore forming domain (Gasdermin)	Gasdermin pore forming domain	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resis ...	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resistance in melanoma cells [2]. This family also includes the gasdermin protein [3]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Gasdermin-E, N-terminal,Gasdermin-D, N-terminal,Gasdermin-D, p40,Deafness, autosomal dominant 5	ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity phosphatidylglycerol binding cardiolipin binding phosphatidic acid binding phosphatidylinositol-4-phosphate binding modified amino acid binding phosphatidylserine binding	response to peptide cellular response to tumor necrosis factor response to stimulus response to chemical response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction response to peptide cellular response to tumor necrosis factor response to stimulus response to chemical response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of MAPK cascade biological regulation positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication cellular process positive regulation of signaling response to tumor cell positive regulation of response to biotic stimulus regulation of response to biotic stimulus positive regulation of immune response to tumor cell immune response to tumor cell immune response regulation of immune response to tumor cell regulation of response to tumor cell response to biotic stimulus positive regulation of immune response immune system process regulation of immune response regulation of immune system process positive regulation of immune system process positive regulation of response to tumor cell negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation negative regulation of cellular process negative regulation of biological process multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus regulation of programmed cell death regulation of intrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway intrinsic apoptotic signaling pathway positive regulation of programmed cell death regulation of apoptotic process cell death positive regulation of apoptotic process apoptotic signaling pathway positive regulation of intrinsic apoptotic signaling pathway apoptotic process programmed cell death regulation of apoptotic signaling pathway defense response response to stress pyroptotic cell death pyroptotic inflammatory response inflammatory response cellular response to virus biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to external biotic stimulus response to virus ear morphogenesis embryonic organ morphogenesis developmental process ear development sensory organ development embryonic morphogenesis animal organ development embryo development multicellular organism development anatomical structure morphogenesis sensory organ morphogenesis anatomical structure development animal organ morphogenesis embryonic organ development animal gross anatomical part developmental process inner ear development inner ear morphogenesis interleukin-1 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of interleukin-1 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process regulation of defense response regulation of response to external stimulus regulation of inflammatory response positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stress positive regulation of defense response ceramide metabolic process sphingolipid biosynthetic process ceramide biosynthetic process lipid biosynthetic process sphingolipid metabolic process primary metabolic process lipid metabolic process defense response to symbiont defense response to other organism innate immune response RNA metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis pore complex assembly defense response to bacterium response to bacterium regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production interleukin-1 beta production pattern recognition receptor signaling pathway immune response-activating signaling pathway inflammasome-mediated signaling pathway canonical inflammasome complex assembly innate immune response-activating signaling pathway regulation of innate immune response NLRP3 inflammasome complex assembly activation of innate immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway immune response-regulating signaling pathway positive regulation of innate immune response establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization defense response to Gram-negative bacterium protein metabolic process protein maturation cell surface receptor signaling pathway cytokine-mediated signaling pathway cellular response to interleukin-1 interleukin-1-mediated signaling pathway response to interleukin-1 positive regulation of interleukin-18 production regulation of interleukin-18 production interleukin-18 production protein complex oligomerization protein homooligomerization membrane organization wound healing plasma membrane repair plasma membrane organization response to wounding endomembrane system organization cellular response to interleukin-18 response to interleukin-18 interleukin-18-mediated signaling pathway defense response to Gram-positive bacterium	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle mitochondrial membrane mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle mitochondrial membrane mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle mitochondrial envelope organelle membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen canonical inflammasome complex protein-containing complex NLRP3 inflammasome complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR040460	Gasdermin, pore forming domain	Domain
A, B	IPR041263	Gasdermin, PUB domain	Domain
A, B	IPR042377	Gasdermin-E	Family
A, B	IPR042377	Gasdermin-E	Family
A, B	IPR040460	Gasdermin, pore forming domain	Domain
A, B	IPR041263	Gasdermin, PUB domain	Domain
A, B	IPR040460	Gasdermin, pore forming domain	Domain
A, B	IPR007677	Gasdermin	Family
A, B	IPR041263	Gasdermin, PUB domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: O60443	autosomal dominant nonsyndromic deafness 5 nonsyndromic genetic deafness rheumatoid arthritis hearing loss disorder astrocytic tumor endogenous depression large cell medulloblastoma osteosarcoma pituitary cancer tuberculosis glioblastoma malignant mesothelioma ovarian cancer psoriasis bipolar disorder autosomal dominant nonsyndromic deafness 5 nonsyndromic genetic deafness rheumatoid arthritis hearing loss disorder astrocytic tumor endogenous depression large cell medulloblastoma osteosarcoma pituitary cancer tuberculosis glioblastoma malignant mesothelioma ovarian cancer psoriasis bipolar disorder pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.