9UJT | pdb_00009ujt

RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth N]DNA (198-MER)---
B [auth T]DNA (198-MER)---
C [auth A]DNA-directed RNA polymerase subunit
D [auth B]DNA-directed RNA polymerase subunit beta
E [auth C]RNA polymerase II third largest subunit B44, part of central core
F [auth D]RNA polymerase II subunit B32
G [auth E]RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III
H [auth F]RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III
I [auth G]RNA polymerase II subunit
J [auth H]DNA-directed RNA polymerases I, II, and III subunit RPABC3
K [auth I]DNA-directed RNA polymerase subunit
L [auth J]RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III
M [auth K]RNA polymerase II subunit B12.5
N [auth L]RNA polymerase subunit ABC10-alpha
O [auth P]RNA (5'-R(P*CP*UP*UP*GP*GP*GP*UP*GP*UP*UP*U)-3')---
P [auth e],
R [auth g]
Histone H3.1
Q [auth f],
S [auth h]
Histone H4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR007081RNA polymerase Rpb1, domain 5Domain
C [auth A]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
C [auth A]IPR007075RNA polymerase Rpb1, domain 6Domain
C [auth A]IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
C [auth A]IPR007083RNA polymerase Rpb1, domain 4Domain
C [auth A]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
C [auth A]IPR006592RNA polymerase, N-terminalDomain
C [auth A]IPR007066RNA polymerase Rpb1, domain 3Domain
C [auth A]IPR007073RNA polymerase Rpb1, domain 7Domain
C [auth A]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
C [auth A]IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
C [auth A]IPR000722RNA polymerase, alpha subunitDomain
C [auth A]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
C [auth A]IPR007080RNA polymerase Rpb1, domain 1Domain
D [auth B]IPR007642RNA polymerase Rpb2, domain 2Domain
D [auth B]IPR015712DNA-directed RNA polymerase, subunit 2Family
D [auth B]IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
D [auth B]IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
D [auth B]IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
D [auth B]IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
D [auth B]IPR007645RNA polymerase Rpb2, domain 3Domain
D [auth B]IPR007646RNA polymerase Rpb2, domain 4Domain
D [auth B]IPR007647RNA polymerase Rpb2, domain 5Domain
D [auth B]IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
D [auth B]IPR007644RNA polymerase, beta subunit, protrusionDomain
D [auth B]IPR007641RNA polymerase Rpb2, domain 7Domain
E [auth C]IPR011262DNA-directed RNA polymerase, insert domainDomain
E [auth C]IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
E [auth C]IPR050518Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase SubunitFamily
E [auth C]IPR022842DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1Family
E [auth C]IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
E [auth C]IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved siteConserved Site
E [auth C]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
F [auth D]IPR005574RNA polymerase subunit Rpb4/RPC9Family
F [auth D]IPR010997HRDC-like superfamilyHomologous Superfamily
F [auth D]IPR006590RNA polymerase Rpb4/RPC9, coreDomain
F [auth D]IPR038324Rpb4/RPC9 superfamilyHomologous Superfamily
F [auth D]IPR045222DNA-directed RNA polymerase II subunit Rpb4-likeFamily
G [auth E]IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5Family
G [auth E]IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyHomologous Superfamily
G [auth E]IPR035913RPB5-like RNA polymerase subunit superfamilyHomologous Superfamily
G [auth E]IPR000783RNA polymerase, subunit H/Rpb5 C-terminalDomain
G [auth E]IPR020608RNA polymerase, subunit H/Rpb5, conserved siteConserved Site
G [auth E]IPR005571RNA polymerase, Rpb5, N-terminalDomain
H [auth F]IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved siteConserved Site
H [auth F]IPR028363DNA-directed RNA polymerase, subunit RPB6Family
H [auth F]IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
H [auth F]IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
H [auth F]IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitFamily
I [auth G]IPR003029S1 domainDomain
I [auth G]IPR045113RNA polymerase subunit Rpb7-likeFamily
I [auth G]IPR005576RNA polymerase Rpb7-like , N-terminalDomain
I [auth G]IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyHomologous Superfamily
I [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth H]IPR005570DNA-directed RNA polymerases I, II, and III subunit RPABC3Family
J [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth I]IPR001529DNA-directed RNA polymerase II subunit RPB9-like, zinc ribbonDomain
K [auth I]IPR012164DNA-directed RNA polymerase subunit/transcription factor SFamily
K [auth I]IPR001222Zinc finger, TFIIS-typeDomain
K [auth I]IPR034012Pol II subunit B9, C-terminal zinc ribbonDomain
K [auth I]IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved siteConserved Site
L [auth J]IPR023580RNA polymerase subunit RPB10Homologous Superfamily
L [auth J]IPR020789RNA polymerases, subunit N, zinc binding siteBinding Site
L [auth J]IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10Family
M [auth K]IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainDomain
M [auth K]IPR037685RNA polymerase RBP11Family
M [auth K]IPR022905DNA-directed RNA polymerase subunit Rpo11-likeFamily
M [auth K]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
M [auth K]IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved siteConserved Site
N [auth L]IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4Family
N [auth L]IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4Homologous Superfamily
N [auth L]IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4Family
P [auth e],
R [auth g]
IPR009072Histone-foldHomologous Superfamily
P [auth e],
R [auth g]
IPR007125Core Histone H2A/H2B/H3 domainDomain
P [auth e],
R [auth g]
IPR000164Histone H3/CENP-AFamily
Q [auth f],
S [auth h]
IPR009072Histone-foldHomologous Superfamily
Q [auth f],
S [auth h]
IPR035425CENP-T/Histone H4, histone foldDomain
Q [auth f],
S [auth h]
IPR001951Histone H4Family
Q [auth f],
S [auth h]
IPR019809Histone H4, conserved siteConserved Site
Q [auth f],
S [auth h]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
P [auth e],
R [auth g]
PharosP68431
Q [auth f],
S [auth h]
PharosP62805