9TNZ | pdb_00009tnz

SP100 CARD filament

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	PF03172	HSR domain (HSR)	HSR domain	The Sp100 protein is a constituent of nuclear domains, also known as nuclear dots (NDs). An ND-targeting region that coincides with a homodimerization domain was mapped in Sp100. Sequences similar to the Sp100 homodimerization/ND-targeting region occ ...	The Sp100 protein is a constituent of nuclear domains, also known as nuclear dots (NDs). An ND-targeting region that coincides with a homodimerization domain was mapped in Sp100. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins and constitute a novel protein motif, termed HSR domain (for homogeneously-staining region) [2]. The HSR domain has also been named ASS (AIRE, Sp-100 and Sp140) [3]. This domain is usually found at the amino terminus of proteins that contain a SAND domain Pfam:PF01342.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	Maltose/maltodextrin-binding periplasmic protein,Nuclear autoantigen Sp-100	transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding protein binding protein domain specific binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding chromo shadow domain binding transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding protein binding protein domain specific binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding chromo shadow domain binding DNA binding nucleic acid binding kinase binding enzyme binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity transcription corepressor activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein homodimerization activity protein dimerization activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility locomotion localization transport carbohydrate transport oligosaccharide transport disaccharide transport establishment of localization maltose transport polysaccharide localization dextrin transport macromolecule localization maltodextrin transmembrane transport polysaccharide transport response to disaccharide response to oxygen-containing compound detection of maltose stimulus detection of stimulus response to carbohydrate detection of chemical stimulus detection of disaccharide stimulus response to maltose detection of carbohydrate stimulus regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process multicellular organismal process regulation of multicellular organismal development regulation of developmental process blood vessel morphogenesis tube development angiogenesis vasculature development regulation of vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development regulation of signaling cell surface receptor signaling pathway signaling regulation of signal transduction cell communication Fas signaling pathway regulation of response to stimulus regulation of cell communication signal transduction regulation of Fas signaling pathway negative regulation of protein transport regulation of localization establishment of protein localization negative regulation of nucleocytoplasmic transport nucleocytoplasmic transport nuclear transport negative regulation of intracellular protein transport negative regulation of transport establishment of localization in cell intracellular protein localization nuclear export regulation of protein export from nucleus regulation of intracellular transport negative regulation of establishment of protein localization intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus protein export from nucleus maintenance of location regulation of intracellular protein transport intracellular protein transport maintenance of protein location cellular localization regulation of protein localization maintenance of location in cell maintenance of protein location in cell negative regulation of protein export from nucleus negative regulation of protein localization negative regulation of intracellular transport regulation of transport regulation of establishment of protein localization maintenance of protein location in nucleus regulation of protein transport protein transport regulation of cellular localization protein localization to organelle maintenance of protein localization in organelle extrinsic apoptotic signaling pathway via death domain receptors regulation of programmed cell death extrinsic apoptotic signaling pathway regulation of apoptotic process cell death regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway via death domain receptors apoptotic process programmed cell death regulation of apoptotic signaling pathway intracellular receptor signaling pathway response to endogenous stimulus retinoic acid receptor signaling pathway hormone-mediated signaling pathway intracellular signal transduction cellular response to endogenous stimulus response to hormone nuclear receptor-mediated signaling pathway cellular response to hormone stimulus response to retinoic acid response to lipid response to peptide response to cytokine telomere organization chromosome organization DNA metabolic process telomere maintenance cellular component organization organelle organization cellular component organization or biogenesis regulation of viral process viral process biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus response to type I interferon response to type II interferon cytokine-mediated signaling pathway cellular response to type II interferon interferon-mediated signaling pathway cellular response to cytokine stimulus type II interferon-mediated signaling pathway negative regulation of locomotion regulation of cell motility endothelial cell migration negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration negative regulation of cell motility negative regulation of cell migration viral gene expression negative regulation of viral process regulation of viral transcription negative regulation of viral transcription viral transcription signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator signal transduction in response to DNA damage transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process cellular response to type I interferon type I interferon-mediated signaling pathway	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space outer membrane-bounded periplasmic space cell envelope membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle membraneless organelle nuclear lumen nuclear periphery cytoplasm nucleoplasm nuclear body chromosome chromosome, telomeric region chromosomal region PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR006061	Solute-binding family 1, conserved site	Conserved Site
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR006060	Maltose/Cyclodextrin ABC transporter, substrate-binding protein	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR000770	SAND domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR004865	HSR domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR043563	Nuclear body protein Sp110/Sp140/Sp140L-like	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR010919	SAND-like domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR009071	High mobility group box domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR036910	High mobility group box domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	Pharos: P23497	breast cancer glioblastoma lung carcinoma non-small cell lung carcinoma pilocytic astrocytoma psoriasis ulcerative colitis cutaneous lupus erythematosus juvenile dermatomyositis malignant ependymoma osteosarcoma pituitary cancer rheumatoid arthritis dermatomyositis lung cancer breast cancer glioblastoma lung carcinoma non-small cell lung carcinoma pilocytic astrocytoma psoriasis ulcerative colitis cutaneous lupus erythematosus juvenile dermatomyositis malignant ependymoma osteosarcoma pituitary cancer rheumatoid arthritis dermatomyositis lung cancer malignant glioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.