Annotations: 9SYQ

Structure of S. pombe Pta1 - Ssu72 - PNUTS - Swd2.2 complex - crystal form 1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M, N, O, P	Cleavage and polyadenylation factor complex subunit C74.02c	RNA binding binding nucleic acid binding	mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex catalytic complex DPS complex protein serine/threonine phosphatase complex
I, J, K, L	RNA polymerase II subunit A C-terminal domain phosphatase ssu72	phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat phosphatase activity RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity	phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process cellular process macromolecule metabolic process termination of RNA polymerase II transcription mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway mRNA processing mRNA metabolic process RNA 3'-end processing RNA processing regulation of cellular process regulation of cellular component organization negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biosynthetic process regulation of biological process heterochromatin formation regulation of chromatin organization epigenetic regulation of gene expression negative regulation of metabolic process biological regulation siRNA-independent facultative heterochromatin formation regulation of siRNA-independent facultative heterochromatin formation heterochromatin organization regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of heterochromatin organization facultative heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of metabolic process termination of RNA polymerase II transcription, poly(A)-coupled regulation of pericentric heterochromatin formation pericentric heterochromatin formation constitutive heterochromatin formation positive regulation of organelle organization telomere organization cell cycle DNA replication telomere maintenance via semi-conservative replication regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process cell cycle regulation of nucleobase-containing compound metabolic process positive regulation of telomere maintenance regulation of cell cycle process DNA metabolic process regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization telomere maintenance DNA replication positive regulation of DNA metabolic process regulation of DNA metabolic process regulation of telomere maintenance positive regulation of cellular component organization positive regulation of biological process nuclear DNA replication positive regulation of cell cycle process regulation of cell cycle positive regulation of cellular process cell cycle process DNA-templated DNA replication chromosome organization regulation of telomere maintenance via semi-conservative replication positive regulation of cell cycle organelle organization positive regulation of telomere maintenance via semi-conservative replication signaling	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex membraneless organelle intracellular membraneless organelle chromatin chromosome
E, F, G, H	mRNA cleavage and polyadenylation specificity factor complex subunit pta1	-	RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process tRNA processing metabolic process cellular process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process tRNA processing metabolic process cellular process macromolecule metabolic process RNA processing mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway mRNA processing mRNA metabolic process RNA 3'-end processing termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex
A, B, C, D	Uncharacterized WD repeat-containing protein C824.04	chromatin binding binding	mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process regulation of cellular process regulation of cellular component organization negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biosynthetic process regulation of biological process heterochromatin formation regulation of chromatin organization epigenetic regulation of gene expression negative regulation of metabolic process biological regulation siRNA-independent facultative heterochromatin formation regulation of siRNA-independent facultative heterochromatin formation heterochromatin organization regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of heterochromatin organization facultative heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of metabolic process termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription regulation of pericentric heterochromatin formation pericentric heterochromatin formation constitutive heterochromatin formation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex catalytic complex DPS complex protein serine/threonine phosphatase complex membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I, J, K, L	IPR006811	RNA polymerase II subunit A	Family
E, F, G, H	IPR011989	Armadillo-like helical	Homologous Superfamily
E, F, G, H	IPR021850	Symplekin/Pta1	Family
E, F, G, H	IPR032460	Symplekin/Pta1, N-terminal	Domain
A, B, C, D	IPR037867	COMPASS component Swd2/WDR82	Family
A, B, C, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR001680	WD40 repeat	Repeat
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

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9SYQ | pdb_00009syq

Structure of S. pombe Pta1 - Ssu72 - PNUTS - Swd2.2 complex - crystal form 1

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage