9SS4 | pdb_00009ss4

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B0]Large ribosomal subunit protein bL27
D [auth B3]Large ribosomal subunit protein uL30
J [auth B9]Large ribosomal subunit protein bL36A
M [auth BC]50S ribosomal protein L3
Q [auth BG]Small ribosomal subunit protein bS20
X [auth BQ]Large ribosomal subunit protein bL17
Z [auth BS]Large ribosomal subunit protein bL19
IA [auth FS]Ribosomal silencing factor RsfS
I [auth B8]Large ribosomal subunit protein bL35
H [auth B7]Large ribosomal subunit protein bL34
G [auth B6]Large ribosomal subunit protein bL33
F [auth B5]Large ribosomal subunit protein bL32
E [auth B4]Large ribosomal subunit protein bL31A
HA [auth D3]5S Ribosomal RNA---
GA [auth D2]23S Ribosomal RNA---
FA [auth BY]Large ribosomal subunit protein bL25
EA [auth BX]Large ribosomal subunit protein uL24
DA [auth BW]Large ribosomal subunit protein uL23
C [auth B2]Large ribosomal subunit protein uL29
CA [auth BV]Large ribosomal subunit protein uL22
BA [auth BU]Large ribosomal subunit protein bL21
AA [auth BT]Large ribosomal subunit protein bL20
Y [auth BR]Large ribosomal subunit protein uL18
W [auth BP]50S ribosomal protein L16
V [auth BO]Large ribosomal subunit protein uL15
U [auth BN]Large ribosomal subunit protein uL14
T [auth BM]Large ribosomal subunit protein uL13
B [auth B1]Large ribosomal subunit protein bL28
S [auth BK]50S ribosomal protein L11
R [auth BI]Large ribosomal subunit protein bL9
P [auth BF]Large ribosomal subunit protein uL6
O [auth BE]Large ribosomal subunit protein uL5
N [auth BD]Large ribosomal subunit protein uL4
L [auth BB]Large ribosomal subunit protein uL2
K [auth BA]Large ribosomal subunit protein uL1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B0]IPR001684Large ribosomal subunit protein bL27Family
A [auth B0]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
D [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
D [auth B3]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
D [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
D [auth B3]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
J [auth B9]IPR000473Large ribosomal subunit protein bL36Family
J [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
M [auth BC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
M [auth BC]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
M [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
M [auth BC]IPR000597Large ribosomal subunit protein uL3Family
Q [auth BG]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
Q [auth BG]IPR002583Small ribosomal subunit protein bS20Family
X [auth BQ]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
X [auth BQ]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
X [auth BQ]IPR000456Large ribosomal subunit protein bL17Family
Z [auth BS]IPR001857Large ribosomal subunit protein bL19Family
Z [auth BS]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
Z [auth BS]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
Z [auth BS]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth FS]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
IA [auth FS]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily
I [auth B8]IPR021137Large ribosomal subunit protein bL35-likeFamily
I [auth B8]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
I [auth B8]IPR001706Large ribosomal subunit protein bL35Family
I [auth B8]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
H [auth B7]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
H [auth B7]IPR000271Large ribosomal subunit protein bL34Family
G [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
G [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
G [auth B6]IPR001705Large ribosomal subunit protein bL33Family
G [auth B6]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
F [auth B5]IPR002677Large ribosomal subunit protein bL32Family
F [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
F [auth B5]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
E [auth B4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
E [auth B4]IPR027491Large ribosomal subunit protein bL31 type AFamily
E [auth B4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
E [auth B4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
FA [auth BY]IPR020055Ribosomal protein bL25, short-formFamily
FA [auth BY]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
FA [auth BY]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
FA [auth BY]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
FA [auth BY]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
EA [auth BX]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
EA [auth BX]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
EA [auth BX]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EA [auth BX]IPR003256Large ribosomal subunit protein uL24Family
EA [auth BX]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
EA [auth BX]IPR005824KOWDomain
EA [auth BX]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
DA [auth BW]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
DA [auth BW]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
DA [auth BW]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
DA [auth BW]IPR013025Large ribosomal subunit protein uL23-likeFamily
C [auth B2]IPR050063Universal ribosomal protein uL29Family
C [auth B2]IPR001854Large ribosomal subunit protein uL29Family
C [auth B2]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
C [auth B2]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth BV]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
CA [auth BV]IPR001063Large ribosomal subunit protein uL22Family
CA [auth BV]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
CA [auth BV]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
CA [auth BV]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
BA [auth BU]IPR028909Large ribosomal subunit protein bL21-likeFamily
BA [auth BU]IPR001787Large ribosomal subunit protein bL21Family
BA [auth BU]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
BA [auth BU]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
AA [auth BT]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
AA [auth BT]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
AA [auth BT]IPR005813Large ribosomal subunit protein bL20Family
Y [auth BR]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
Y [auth BR]IPR057268Large ribosomal subunit protein uL18Family
Y [auth BR]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
W [auth BP]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
W [auth BP]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
W [auth BP]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
W [auth BP]IPR016180Large ribosomal subunit protein uL16 domainDomain
W [auth BP]IPR047873Large ribosomal subunit protein uL16Family
V [auth BO]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth BO]IPR030878Large ribosomal subunit protein uL15Family
V [auth BO]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
V [auth BO]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
V [auth BO]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
U [auth BN]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth BN]IPR000218Large ribosomal subunit protein uL14Family
U [auth BN]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
U [auth BN]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
T [auth BM]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
T [auth BM]IPR005822Large ribosomal subunit protein uL13Family
T [auth BM]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
T [auth BM]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
B [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
B [auth B1]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
B [auth B1]IPR026569Large ribosomal subunit protein bL28Family
B [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
S [auth BK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
S [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
S [auth BK]IPR000911Ribosomal protein uL11Family
S [auth BK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
S [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
S [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
S [auth BK]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
R [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
R [auth BI]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
R [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
R [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
R [auth BI]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
R [auth BI]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
R [auth BI]IPR000244Large ribosomal subunit protein bL9Family
P [auth BF]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
P [auth BF]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
P [auth BF]IPR000702Large ribosomal subunit protein uL6-likeFamily
P [auth BF]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
P [auth BF]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
O [auth BE]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
O [auth BE]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
O [auth BE]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
O [auth BE]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
O [auth BE]IPR002132Large ribosomal subunit protein uL5Family
O [auth BE]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
N [auth BD]IPR013005Large ribosomal subunit protein uL4-likeFamily
N [auth BD]IPR002136Large ribosomal subunit protein uL4Family
N [auth BD]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
L [auth BB]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
L [auth BB]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
L [auth BB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth BB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth BB]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
L [auth BB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth BB]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
L [auth BB]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
L [auth BB]IPR002171Large ribosomal subunit protein uL2Family
K [auth BA]IPR005878Large ribosomal subunit protein uL1, bacteriaFamily
K [auth BA]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
K [auth BA]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
K [auth BA]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
K [auth BA]IPR002143Large ribosomal subunit protein uL1Family
K [auth BA]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily