9SCU | pdb_00009scu

Cryo-EM structure of the Arabidopsis thaliana 60S ribosomal subunit


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth 6]RNA (119-MER)---
H [auth CL]Large ribosomal subunit protein eL13z
G [auth CY]Large ribosomal subunit protein uL24z
F [auth Cl]Large ribosomal subunit protein eL39z/eL39x
E [auth Cp](thale cress) hypothetical protein
QA [auth CJ]Large ribosomal subunit protein uL5z
PA [auth Cj]Large ribosomal subunit protein eL37z
OA [auth CI]Large ribosomal subunit protein uL16y
NA [auth Ci]Large ribosomal subunit protein eL36y
D [auth CK]Large ribosomal subunit protein eL42z/eL42y
MA [auth CH]Large ribosomal subunit protein uL6z/uL6y
LA [auth Ch]Large ribosomal subunit protein uL29x
KA [auth CG]Large ribosomal subunit protein eL8z
JA [auth Cg]Large ribosomal subunit protein eL34z
IA [auth CF]Large ribosomal subunit protein uL30y
HA [auth CX]Large ribosomal subunit protein uL23y
GA [auth Cf]Large ribosomal subunit protein eL33z
FA [auth CW]Large ribosomal subunit protein eL24z
EA [auth CE]Large ribosomal subunit protein eL6x
DA [auth CV]Large ribosomal subunit protein uL14x/uL14z/uL14y
C [auth CA]Large ribosomal subunit protein uL2x
CA [auth Ce]Large ribosomal subunit protein eL32z
BA [auth CT]Large ribosomal subunit protein eL21x/eL21w
AA [auth CD]Large ribosomal subunit protein uL18z
Z [auth CS]Ribosomal protein L18ae/LX family protein
Y [auth Cd]Large ribosomal subunit protein eL31x
X [auth CR]Large ribosomal subunit protein eL19z
W [auth CC]Large ribosomal subunit protein uL4z
V [auth CQ]Large ribosomal subunit protein eL18y
U [auth Cc]Large ribosomal subunit protein eL30x
T [auth CP]Large ribosomal subunit protein uL22z
B [auth Ck]Large ribosomal subunit protein eL38z/eL38y
S [auth CB]Large ribosomal subunit protein uL3z
R [auth CO]Large ribosomal subunit protein uL13w
Q [auth Cb]60S ribosomal protein L29
P [auth w]Large ribosomal subunit protein eL22z
O [auth Ca]Large ribosomal subunit protein uL15x
N [auth CN]Large ribosomal subunit protein eL15y
M [auth 7]RNA (151-MER)---
L [auth CM]Large ribosomal subunit protein eL14z
K [auth CZ]Large ribosomal subunit protein eL27x
J [auth Cm]Ubiquitin-ribosomal protein eL40z fusion protein
A [auth 5]25S RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth CL]IPR001380Large ribosomal subunit protein eL13Family
H [auth CL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
G [auth CY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth CY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth CY]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
G [auth CY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
G [auth CY]IPR005824KOWDomain
G [auth CY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
F [auth Cl]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
F [auth Cl]IPR000077Large ribosomal subunit protein eL39Family
F [auth Cl]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
E [auth Cp]IPR002674Large ribosomal subunit protein eL43Family
E [auth Cp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
E [auth Cp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
QA [auth CJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
QA [auth CJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
QA [auth CJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
QA [auth CJ]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
QA [auth CJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
QA [auth CJ]IPR002132Large ribosomal subunit protein uL5Family
PA [auth Cj]IPR001569Large ribosomal subunit protein eL37Family
PA [auth Cj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
PA [auth Cj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
PA [auth Cj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
OA [auth CI]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
OA [auth CI]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
OA [auth CI]IPR047873Large ribosomal subunit protein uL16Family
OA [auth CI]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
OA [auth CI]IPR016180Large ribosomal subunit protein uL16 domainDomain
NA [auth Ci]IPR000509Large ribosomal subunit protein eL36Family
NA [auth Ci]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
D [auth CK]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
D [auth CK]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth CK]IPR000552Large ribosomal subunit protein eL42Family
MA [auth CH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
MA [auth CH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
MA [auth CH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
MA [auth CH]IPR000702Large ribosomal subunit protein uL6-likeFamily
LA [auth Ch]IPR001854Large ribosomal subunit protein uL29Family
LA [auth Ch]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth Ch]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
LA [auth Ch]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
KA [auth CG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
KA [auth CG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KA [auth CG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
KA [auth CG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
KA [auth CG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
KA [auth CG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
JA [auth Cg]IPR008195Large ribosomal subunit protein eL34Family
JA [auth Cg]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
JA [auth Cg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
IA [auth CF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IA [auth CF]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
IA [auth CF]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
IA [auth CF]IPR039699Large ribosomal subunit protein uL30Family
IA [auth CF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
IA [auth CF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IA [auth CF]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
HA [auth CX]IPR019985Large ribosomal subunit protein uL23Family
HA [auth CX]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
HA [auth CX]IPR013025Large ribosomal subunit protein uL23-likeFamily
HA [auth CX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
HA [auth CX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
HA [auth CX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
GA [auth Cf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
GA [auth Cf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth Cf]IPR001780Large ribosomal subunit protein eL33Family
GA [auth Cf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
FA [auth CW]IPR011017TRASH domainDomain
FA [auth CW]IPR056366Large ribosomal subunit protein eL24Family
FA [auth CW]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
FA [auth CW]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
FA [auth CW]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
EA [auth CE]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
EA [auth CE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
EA [auth CE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
EA [auth CE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EA [auth CE]IPR000915Large ribosomal subunit protein eL6Family
DA [auth CV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DA [auth CV]IPR000218Large ribosomal subunit protein uL14Family
DA [auth CV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
C [auth CA]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
C [auth CA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth CA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth CA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth CA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth CA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth CA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth CA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth CA]IPR002171Large ribosomal subunit protein uL2Family
CA [auth Ce]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
CA [auth Ce]IPR001515Large ribosomal subunit protein eL32Family
CA [auth Ce]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
BA [auth CT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
BA [auth CT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
BA [auth CT]IPR001147Large ribosomal subunit protein eL21Family
BA [auth CT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth CD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
AA [auth CD]IPR057268Large ribosomal subunit protein uL18Family
AA [auth CD]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
Z [auth CS]IPR028877Large ribosomal subunit protein eL20Family
Z [auth CS]IPR023573Large ribosomal subunit protein eL20 domainDomain
Z [auth CS]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
Y [auth Cd]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
Y [auth Cd]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
Y [auth Cd]IPR000054Large ribosomal subunit protein eL31Family
X [auth CR]IPR039547Large ribosomal subunit protein eL19Family
X [auth CR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
X [auth CR]IPR057260Ribosomal protein L19e, C-terminal domainDomain
X [auth CR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
X [auth CR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
X [auth CR]IPR057259Ribosomal protein L19e, N-terminal domainDomain
X [auth CR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
X [auth CR]IPR000196Large ribosomal subunit protein eL19 domainDomain
W [auth CC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
W [auth CC]IPR002136Large ribosomal subunit protein uL4Family
W [auth CC]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
W [auth CC]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
W [auth CC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
V [auth CQ]IPR000039Large ribosomal subunit protein eL18Family
V [auth CQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth CQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth Cc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
U [auth Cc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
U [auth Cc]IPR000231Large ribosomal subunit protein eL30Family
U [auth Cc]IPR039109Large ribosomal subunit protein eL30-likeFamily
U [auth Cc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
T [auth CP]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
T [auth CP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth CP]IPR001063Large ribosomal subunit protein uL22Family
T [auth CP]IPR057265Large ribosomal subunit protein uL22, archaeaFamily
T [auth CP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
B [auth Ck]IPR002675Large ribosomal subunit protein eL38Family
B [auth Ck]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
S [auth CB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
S [auth CB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
S [auth CB]IPR000597Large ribosomal subunit protein uL3Family
S [auth CB]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
S [auth CB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
R [auth CO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth CO]IPR005822Large ribosomal subunit protein uL13Family
R [auth CO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth CO]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
Q [auth Cb]IPR002673Large ribosomal subunit protein eL29Family
P [auth w]IPR002671Large ribosomal subunit protein eL22Family
P [auth w]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
O [auth Ca]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth Ca]IPR030878Large ribosomal subunit protein uL15Family
O [auth Ca]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
O [auth Ca]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
N [auth CN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth CN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
N [auth CN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
N [auth CN]IPR000439Large ribosomal subunit protein eL15Family
L [auth CM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth CM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth CM]IPR039660Large ribosomal subunit protein eL14Family
L [auth CM]IPR002784Large ribosomal subunit protein eL14 domainDomain
K [auth CZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
K [auth CZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
K [auth CZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth CZ]IPR001141Large ribosomal subunit protein eL27Family
K [auth CZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
J [auth Cm]IPR019954Ubiquitin conserved siteConserved Site
J [auth Cm]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
J [auth Cm]IPR000626Ubiquitin-like domainDomain
J [auth Cm]IPR019956Ubiquitin domainDomain
J [auth Cm]IPR050158Ubiquitin and ubiquitin-likeFamily
J [auth Cm]IPR001975Large ribosomal subunit protein eL40 domainDomain
J [auth Cm]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
J [auth Cm]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily