Annotations: 9SCD

Structure of S. pombe PNUTS (565 - 644) bound to Swd2.2 - crystal form 2

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C]	Cleavage and polyadenylation factor complex subunit C74.02c	-	mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex catalytic complex DPS complex protein serine/threonine phosphatase complex
A [auth D]	Uncharacterized WD repeat-containing protein C824.04	chromatin binding binding	mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway RNA metabolic process co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process regulation of cellular process regulation of cellular component organization negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biosynthetic process regulation of biological process heterochromatin formation regulation of chromatin organization epigenetic regulation of gene expression negative regulation of metabolic process biological regulation siRNA-independent facultative heterochromatin formation regulation of siRNA-independent facultative heterochromatin formation heterochromatin organization regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of heterochromatin organization facultative heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of metabolic process termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription regulation of pericentric heterochromatin formation pericentric heterochromatin formation constitutive heterochromatin formation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex phosphatase complex catalytic complex DPS complex protein serine/threonine phosphatase complex membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D]	IPR037867	COMPASS component Swd2/WDR82	Family
A [auth D]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth D]	IPR001680	WD40 repeat	Repeat
A [auth D]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily