9S60 | pdb_00009s60

Structural and proteomics analysis of the mouse cathepsin B - DARPin 4m3 complex reveals determinants of species - specific binding

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth A2]	PF00112	Papain family cysteine protease (Peptidase_C1)	Papain family cysteine protease		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth B], D [auth B2]	DARPin 4m3	-	-	-
A, B [auth A2]	Cathepsin B	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity collagen binding protein-containing complex binding binding protein binding proteoglycan binding carbohydrate derivative binding peptide binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity collagen binding protein-containing complex binding binding protein binding proteoglycan binding carbohydrate derivative binding peptide binding kininogen binding identical protein binding	collagen catabolic process catabolic process metabolic process cellular process collagen metabolic process regulation of hormone levels phenol-containing compound metabolic process biological regulation modified amino acid metabolic process regulation of biological quality hormone metabolic process thyroid hormone generation thyroid hormone metabolic process biological process involved in interspecies interaction between organisms collagen catabolic process catabolic process metabolic process cellular process collagen metabolic process regulation of hormone levels phenol-containing compound metabolic process biological regulation modified amino acid metabolic process regulation of biological quality hormone metabolic process thyroid hormone generation thyroid hormone metabolic process biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation neuron apoptotic process apoptotic process cell death programmed cell death multi-multicellular organism process multicellular organismal process placenta development reproductive process maternal process involved in female pregnancy multicellular organismal reproductive process animal organ development developmental process involved in reproduction maternal placenta development female pregnancy multi-organism reproductive process decidualization cellular response to stimulus response to thyroid hormone response to stimulus response to endogenous stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular response to thyroid hormone stimulus cellular response to hormone stimulus proteolysis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle apical part of cell plasma membrane region apical plasma membrane membrane microdomain membrane raft plasma membrane raft caveola sarcolemma extracellular matrix external encapsulating structure lytic vacuole vacuole lysosome protein-containing complex peptidase inhibitor complex extracellular region perinuclear region of cytoplasm extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth A2]	IPR025661	Cysteine peptidase, asparagine active site	Active Site
A, B [auth A2]	IPR000169	Cysteine peptidase, cysteine active site	Active Site
A, B [auth A2]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B [auth A2]	IPR012599	Peptidase C1A, propeptide	Domain
A, B [auth A2]	IPR013128	Peptidase C1A	Family
A, B [auth A2]	IPR000668	Peptidase C1A, papain C-terminal	Domain
A, B [auth A2]	IPR025660	Cysteine peptidase, histidine active site	Active Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B [auth A2]	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 9S60 | pdb_00009s60