9RN2 | pdb_00009rn2

Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
MRVPe9rn2M1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
KRVPe9rn2K1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
JRVPe9rn2J1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
IRVPe9rn2I1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
HRVPe9rn2H1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
DRVPe9rn2D1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
GRVPe9rn2G1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
CRVPe9rn2C1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
FRVPe9rn2F1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
BRVPe9rn2B1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
S [auth W]RVPe9rn2W1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
ERVPe9rn2E1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)
ARVPe9rn2A1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVPECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
AT-rich interactive domain-containing protein 1A
Actin, cytoplasmic 1, N-terminally processed
Actin-like protein 6A
Transcription activator BRG1
D, H
Histone H2B type 1-J
C, G
Histone H2A type 1-B/E
B, F
Histone H4
U [auth Y]DNA (147-MER)---
T [auth X]DNA (147-MER)---
S [auth W]Transcription factor SOX-2
R [auth V]Green fluorescent protein,POU domain, class 5, transcription factor 1
Q [auth R]Zinc finger protein ubi-d4
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
N, O
SWI/SNF complex subunit SMARCC2
A, E
Histone H3.1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR048664SWI/SNF Subunit INI1, DNA binding domainDomain
IPR017393Chromatin-remodeling complex component Sfh1/SNF5Family
IPR006939SNF5/SMARCB1/INI1Family
IPR030094AT-rich interactive domain-containing protein 1A, ARID/BRIGHT DNA binding domainDomain
IPR016024Armadillo-type foldHomologous Superfamily
IPR001606ARID DNA-binding domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR021906SWI/SNF-like complex subunit BAF250/OsaFamily
IPR033388SWI/SNF-like complex subunit BAF250, C-terminalDomain
IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR030100SWI/SNF complex subunit BRG1, ATP-bindingDomain
IPR018359Bromodomain, conserved siteConserved Site
IPR049730SNF2/RAD5-like, C-terminal helicase domainDomain
IPR014978Glutamine-Leucine-Glutamine, QLQDomain
IPR006576BRK domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR037259BRK domain superfamilyHomologous Superfamily
IPR001650Helicase, C-terminal domain-likeDomain
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR029295Snf2, ATP coupling domainDomain
IPR001487BromodomainDomain
IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
IPR000330SNF2, N-terminal domainDomain
IPR014012Helicase/SANT-associated domainDomain
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR000558Histone H2BFamily
D, H
IPR007125Core Histone H2A/H2B/H3 domainDomain
D, H
IPR055333Histone H2B, conserved siteConserved Site
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR002119Histone H2AFamily
C, G
IPR007125Core Histone H2A/H2B/H3 domainDomain
C, G
IPR061508Histone H2A, histone foldDomain
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
S [auth W]IPR022097Transcription factor SOXFamily
S [auth W]IPR050140SRY-related HMG-box transcription factor-likeFamily
S [auth W]IPR009071High mobility group box domainDomain
S [auth W]IPR036910High mobility group box domain superfamilyHomologous Superfamily
R [auth V]IPR000786Green fluorescent protein, GFPFamily
R [auth V]IPR011584Green fluorescent protein-relatedFamily
R [auth V]IPR009017Green fluorescent proteinHomologous Superfamily
R [auth V]IPR009057Homeodomain-like superfamilyHomologous Superfamily
R [auth V]IPR000327POU-specific domainDomain
R [auth V]IPR013847POU domainDomain
R [auth V]IPR017970Homeobox, conserved siteConserved Site
R [auth V]IPR050255POU domain transcription factorFamily
R [auth V]IPR010982Lambda repressor-like, DNA-binding domain superfamilyHomologous Superfamily
R [auth V]IPR001356HomeodomainDomain
Q [auth R]IPR001965Zinc finger, PHD-typeDomain
Q [auth R]IPR013087Zinc finger C2H2-typeDomain
Q [auth R]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
Q [auth R]IPR025750DPF1-3, N-terminal domainDomain
Q [auth R]IPR019787Zinc finger, PHD-fingerDomain
Q [auth R]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
Q [auth R]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR003121SWIB/MDM2 domainDomain
IPR038041SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 1, SWIB domainDomain
IPR036885SWIB/MDM2 domain superfamilyHomologous Superfamily
IPR019835SWIB domainDomain
IPR063302SWIFT domainDomain
N, O
IPR009057Homeodomain-like superfamilyHomologous Superfamily
N, O
IPR049898MarR-like, BRCT and chromo domains moduleDomain
N, O
IPR032451SMARCC, C-terminalDomain
N, O
IPR036420BRCT domain superfamilyHomologous Superfamily
N, O
IPR000953Chromo/chromo shadow domainDomain
N, O
IPR032450SMARCC, N-terminalDomain
N, O
IPR032448SMARCC, SWIRM-associated domainDomain
N, O
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
N, O
IPR017884SANT domainDomain
N, O
IPR001005SANT/Myb domainDomain
N, O
IPR007526SWIRM domainDomain
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Core Histone H2A/H2B/H3 domainDomain
A, E
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
Q12824
O14497
P60709
O96019
P51532
D, H
P06899
C, G
P04908
B, F
P62805
S [auth W]P48431
R [auth V]Q01860
Q [auth R]Q92785
Q96GM5
N, O
Q8TAQ2
A, E
P68431