9QO2 | pdb_00009qo2

Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF25983COP9 signalosome complex subunit 2, C-terminal helix (COPS2_C)COP9 signalosome complex subunit 2, C-terminal helixThis short domain is found at the C-terminal end of human COP9 signalosome complex subunit 2 (COPS2) and similar eukaryotic proteins. COPS2 is an essential component of the COP9 signalosome complex, an essential regulator of the ubiquitin conjugation ...This short domain is found at the C-terminal end of human COP9 signalosome complex subunit 2 (COPS2) and similar eukaryotic proteins. COPS2 is an essential component of the COP9 signalosome complex, an essential regulator of the ubiquitin conjugation pathway that is involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP as well as in in early stage of neuronal differentiation via its interaction with NIF3L1. This domain folds into an alpha -helix [10,11].
Domain
A [auth B]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
B [auth C]PF21215COP9 signalosome complex subunit 3-like, C-terminal helix (CSN3-like_C)COP9 signalosome complex subunit 3-like, C-terminal helixThis domain is found in COP9 signalosome complex subunit 3 from humans (CSN3) and similar proteins predominantly found in vertebrates. CSN3 is a component of the eight-subunit COP9 signalosome complex (CSN), which inactivate Cullin-RING E3 ubiquitin ...This domain is found in COP9 signalosome complex subunit 3 from humans (CSN3) and similar proteins predominantly found in vertebrates. CSN3 is a component of the eight-subunit COP9 signalosome complex (CSN), which inactivate Cullin-RING E3 ubiquitin ligases (CRLs) by removing their covalently attached activator, NEDD8. This entry represents the C-terminal helical decoration of this protein [1,2].
Domain
B [auth C]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
C [auth D]PF18420CSN4/RPN5/eIF3a helix turn helix domain (CSN4_RPN5_eIF3a)CSN4/RPN5/eIF3a helix turn helix domainCullin-RING E3 ubiquitin ligases (CRLs) are regulated by the eight-subunit COP9 signalosome (CSN). Enzymatically, CSN functions as an isopeptidase that removes the ubiquitin-like activator NEDD8 from CRLs, but it can also bind deneddylated CRLs and m ...Cullin-RING E3 ubiquitin ligases (CRLs) are regulated by the eight-subunit COP9 signalosome (CSN). Enzymatically, CSN functions as an isopeptidase that removes the ubiquitin-like activator NEDD8 from CRLs, but it can also bind deneddylated CRLs and maintain them in an inactive state. The CSN subunits CSN1, CSN2, CSN3, CSN4, CSN7 and CSN8, share a common domain composition: an N-terminal array of tandem alpha-helical tetratricopeptide/-like repeats, a 34 residue motif, followed by a PCI domain, which encompasses a WH subdomain, a linker, and one or two alpha-helices at the C-terminus. This entry describes the C-terminal helices found on CSN4. The two helices from CSN4 (helices I and II) form a brace roughly perpendicular to the bundle axis in contact with the three C-terminal helices of CSN6. CSN5, whose two C-terminal helices form an antiparallel hairpin, inserts its final C-terminal helix (helix II) into the central CSN6 framework at the core of the bundle. Both CSN1 and CSN4 are dependent on the presence of their C-terminal helix (CSN1 isoform-2 residues: 466-527; and CSN4: 364-406) for integration into CSN. COP9 signalosome shares common architecture with the 26S proteasome lid and eIF3 where the 19S lid subunit RPN5 and the eIF3 core subunit eIF3a share significant structural similarity with CSN4 [1].
Domain
C [auth D]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
D [auth E]PF18323Cop9 signalosome subunit 5 C-terminal domain (CSN5_C)Cop9 signalosome subunit 5 C-terminal domainThe COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs) [1]. The catalytic ac ...The COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs) [1]. The catalytic activity of the CSN complex is carried by subunit 5 (CSN5), also known as c-Jun activation domain-binding protein-1 (Jab1) [1]. This entry is the C-terminal domain found in CSN5 proteins. CSN5, whose two C-terminal helices form an antiparallel hairpin, inserts its final C-terminal helix (helix II) into the central CSN6 framework at the core of the bundle. Deletion of the C-terminal helices has a pronounced effect on CSN integrity [2].
Domain
F [auth G]PF22061CSN7 helical bundle subdomain (CSN7_HB_subdom)CSN7 helical bundle subdomain- Repeat
F [auth G]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
F [auth G]PF18392COP9 signalosome complex subunit 7a helix I domain (CSN7a_helixI)COP9 signalosome complex subunit 7a helix I domainThis is The C-terminal helix I domain found in COP9 signalosome complex subunit 7a. The helix from CSN7 (helix I) contacts CSN6 helices I and II at the base of the bundle, nearest the PCI ring [1]. Domain
G [auth H]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
H [auth I]PF26557Cullin alpha+beta domain (Cullin_AB)Cullin alpha+beta domainThis entry represents the alpha+beta domain found just before the C-terminal domain of Cullin proteins. Domain
H [auth I]PF00888Cullin alpha solenoid domain (Cullin)Cullin alpha solenoid domain- Repeat
H [auth I]PF10557Cullin protein neddylation domain (Cullin_Nedd8)Cullin protein neddylation domainThis is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ...This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae, and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue [1].
Domain
I [auth J]PF12678RING-H2 zinc finger domain (zf-rbx1)RING-H2 zinc finger domainThere are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ...There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control [1].
Domain
J [auth L]PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domainDomain
K [auth M]PF12937F-box-like (F-box-like)F-box-likeThis is an F-box-like family. Domain
L [auth N]PF01111Cyclin-dependent kinase regulatory subunit (CKS)Cyclin-dependent kinase regulatory subunitDomain
N [auth A]PF21151COP9 signalosome complex subunit 1, C-terminal helix (CSN1_C)COP9 signalosome complex subunit 1, C-terminal helixThis is the C-terminal helix from COP9 signalosome complex subunit 1, an essential component of the COP9 signalosome complex (CSN), which involved in various cellular and developmental processes [1,2]. Domain
N [auth A]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
N [auth A]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]COP9 signalosome complex subunit 2
B [auth C]COP9 signalosome complex subunit 3-
C [auth D]COP9 signalosome complex subunit 4
D [auth E]COP9 signalosome complex subunit 5
E [auth F]COP9 signalosome complex subunit 6-
F [auth G]COP9 signalosome complex subunit 7b-
G [auth H]COP9 signalosome complex subunit 8-
H [auth I]Cullin-1
I [auth J]E3 ubiquitin-protein ligase RBX1
J [auth L]S-phase kinase-associated protein 1
K [auth M]S-phase kinase-associated protein 2
L [auth N]Cyclin-dependent kinases regulatory subunit 1
M [auth P]COP9 signalosome complex subunit 9-
N [auth A]COP9 signalosome complex subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
A [auth B]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A [auth B]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A [auth B]IPR000717Proteasome component (PCI) domainDomain
A [auth B]IPR058796COP9 signalosome complex subunit 2, C-terminal helixDomain
B [auth C]IPR048621COP9 signalosome complex subunit 3, C-terminal helixDomain
B [auth C]IPR050756COP9 signalosome complex subunit 3Family
B [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
B [auth C]IPR055089COP9 signalosome complex subunit 3, N-terminal helical repeatsDomain
B [auth C]IPR000717Proteasome component (PCI) domainDomain
C [auth D]IPR041406COP9 signalosome complex subunit 4, helix turn helix domainDomain
C [auth D]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
C [auth D]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
C [auth D]IPR000717Proteasome component (PCI) domainDomain
C [auth D]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
C [auth D]IPR054559PSMD12/CSN4-like, N-terminalDomain
D [auth E]IPR040961Cop9 signalosome subunit 5 C-terminal domainDomain
D [auth E]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
D [auth E]IPR037518MPN domainDomain
D [auth E]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
E [auth F]IPR024969EIF3F/CSN6-like, C-terminalDomain
E [auth F]IPR037518MPN domainDomain
E [auth F]IPR033859COP9 signalosome subunit 6Family
E [auth F]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
F [auth G]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
F [auth G]IPR041481COP9 signalosome complex subunit 7, helix IDomain
F [auth G]IPR000717Proteasome component (PCI) domainDomain
G [auth H]IPR033205COP9 signalosome, subunit CSN8Family
G [auth H]IPR033464CSN8/PSMD8/EIF3KDomain
G [auth H]IPR000717Proteasome component (PCI) domainDomain
H [auth I]IPR045093CullinFamily
H [auth I]IPR016158Cullin homology domainDomain
H [auth I]IPR016157Cullin, conserved siteConserved Site
H [auth I]IPR059120Cullin-like, alpha+beta domainDomain
H [auth I]IPR001373Cullin, N-terminalDomain
H [auth I]IPR019559Cullin, neddylation domainDomain
H [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
H [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth I]IPR036317Cullin homology domain superfamilyHomologous Superfamily
H [auth I]IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
I [auth J]IPR051031RING-box E3 Ubiquitin LigaseFamily
I [auth J]IPR024766Zinc finger, RING-H2-typeDomain
I [auth J]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
I [auth J]IPR001841Zinc finger, RING-typeDomain
J [auth L]IPR016073SKP1 component, POZ domainDomain
J [auth L]IPR001232S-phase kinase-associated protein 1-likeFamily
J [auth L]IPR036296SKP1-like, dimerisation domain superfamilyHomologous Superfamily
J [auth L]IPR016072SKP1 component, dimerisationDomain
J [auth L]IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
J [auth L]IPR016897S-phase kinase-associated protein 1Family
K [auth M]IPR001810F-box domainDomain
K [auth M]IPR036047F-box-like domain superfamilyHomologous Superfamily
K [auth M]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
K [auth M]IPR006553Leucine-rich repeat, cysteine-containing subtypeRepeat
L [auth N]IPR000789Cyclin-dependent kinase, regulatory subunitFamily
L [auth N]IPR036858Cyclin-dependent kinase, regulatory subunit superfamilyHomologous Superfamily
M [auth P]IPR029391COP9 signalosome complex, subunit 9, metazoaFamily
N [auth A]IPR048624COP9 signalosome complex subunit 1, C-terminal helixDomain
N [auth A]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
N [auth A]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
N [auth A]IPR000717Proteasome component (PCI) domainDomain
N [auth A]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth B]PharosP61201
B [auth C]PharosQ9UNS2
C [auth D]PharosQ9BT78
D [auth E]PharosQ92905
E [auth F]PharosQ7L5N1
F [auth G]PharosQ9H9Q2
G [auth H]PharosQ99627
H [auth I]PharosQ13616
I [auth J]PharosP62877
J [auth L]PharosP63208
K [auth M]PharosQ13309
L [auth N]PharosP61024
M [auth P]PharosQ8WXC6
N [auth A]PharosQ13098