9QDW | pdb_00009qdw

Crystal structure of human PLA2G5 in complex with a SMOL inhibitor (compound 1)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Phospholipase A2 group V	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipid binding lipid binding	regulation of immune effector process regulation of biological process biological regulation positive regulation of biological process positive regulation of immune complex clearance by monocytes and macrophages immune effector process immune system process regulation of immune complex clearance by monocytes and macrophages positive regulation of immune effector process regulation of immune system process positive regulation of immune system process immune complex clearance by monocytes and macrophages immune complex clearance icosanoid metabolic process regulation of immune effector process regulation of biological process biological regulation positive regulation of biological process positive regulation of immune complex clearance by monocytes and macrophages immune effector process immune system process regulation of immune complex clearance by monocytes and macrophages positive regulation of immune effector process regulation of immune system process positive regulation of immune system process immune complex clearance by monocytes and macrophages immune complex clearance icosanoid metabolic process leukotriene metabolic process oxoacid metabolic process small molecule biosynthetic process leukotriene biosynthetic process carboxylic acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process icosanoid biosynthetic process small molecule metabolic process metabolic process cellular process organic anion transport carboxylic acid transport secretion transport arachidonate transport lipid localization lipid transport establishment of localization organic acid transport localization arachidonate secretion monocarboxylic acid transport fatty acid transport icosanoid transport macromolecule localization icosanoid secretion long-chain fatty acid transport import into cell membrane fusion organelle membrane fusion vesicle-mediated transport vesicle organization cellular component organization cellular component biogenesis lysosome organization cellular component assembly phagolysosome assembly phagocytosis cellular component organization or biogenesis membrane organization vacuole organization organelle assembly lytic vacuole organization phagosome-lysosome fusion phagosome maturation organelle fusion organelle organization endocytosis vesicle fusion plasma lipoprotein particle organization multicellular organismal process low-density lipoprotein particle remodeling protein-containing complex organization protein-containing complex remodeling protein-lipid complex organization plasma lipoprotein particle remodeling regulation of plasma lipoprotein particle levels protein-lipid complex remodeling phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process primary metabolic process phosphorus metabolic process lipid metabolic process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling lipid catabolic process catabolic process phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process organophosphate catabolic process phosphatidylcholine catabolic process phosphatidylcholine metabolic process glycerolipid metabolic process glycerophospholipid catabolic process phosphatidylglycerol metabolic process negative regulation of lymphocyte proliferation regulation of leukocyte activation negative regulation of biological process regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion negative regulation of cellular process regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation regulation of localization positive regulation of cellular component organization regulation of cellular component organization positive regulation of endocytosis regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport developmental process regulation of developmental process cellular developmental process macrophage derived foam cell differentiation regulation of cell differentiation positive regulation of developmental process foam cell differentiation positive regulation of cell differentiation cell differentiation regulation of macrophage derived foam cell differentiation positive regulation of macrophage derived foam cell differentiation regulation of phospholipase activity regulation of molecular function positive regulation of molecular function positive regulation of hydrolase activity positive regulation of phospholipase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity positive regulation of lipase activity fatty acid metabolic process monocarboxylic acid metabolic process positive regulation of organelle organization positive regulation of phagosome maturation regulation of organelle organization regulation of phagosome maturation regulation of defense response regulation of response to biotic stimulus positive regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus positive regulation of antifungal innate immune response response to biotic stimulus positive regulation of response to external stimulus positive regulation of immune response response to stress regulation of response to stress innate immune response regulation of antifungal innate immune response response to external biotic stimulus antifungal innate immune response positive regulation of innate immune response immune response response to other organism defense response regulation of innate immune response defense response to symbiont response to external stimulus defense response to fungus regulation of defense response to fungus defense response to other organism positive regulation of defense response regulation of immune response response to fungus opsonization cell recognition positive regulation of opsonization regulation of opsonization phagocytosis, recognition	membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secondary lysosome cytoplasm membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secondary lysosome cytoplasm vesicle endocytic vesicle lysosome cell periphery plasma membrane membrane early phagosome Golgi apparatus endomembrane system extracellular region endosome recycling endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR033112	Phospholipase A2, aspartic acid active site	Active Site
A, B	IPR033113	Phospholipase A2, histidine active site	Active Site
A, B	IPR016090	Phospholipase A2-like, central domain	Domain
A, B	IPR001211	Phospholipase A2	Family
A, B	IPR036444	Phospholipase A2 domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P39877	familial benign flecked retina astrocytic tumor glioblastoma lung adenocarcinoma medulloblastoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor invasive ductal breast carcinoma lung cancer oligodendroglioma large cell medulloblastoma malignant ependymoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.