9PRA | pdb_00009pra

In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth 5]39S ribosomal protein L37, mitochondrial
P [auth F]39S ribosomal protein L4, mitochondrial
Y [auth O]39S ribosomal protein L17, mitochondrial
GA [auth W]39S ribosomal protein L27, mitochondrial
RA [auth m]39S ribosomal protein L55, mitochondrial
SA [auth n]Nascent polypeptide---
I [auth 8]39S ribosomal protein L40, mitochondrial
H [auth 7]39S ribosomal protein L39, mitochondrial
G [auth 6]39S ribosomal protein L38, mitochondrial-
NB [auth B]mitochondrial tRNAVal---
MB [auth Af]Acyl carrier protein, mitochondrial
LB [auth Ae]Mitochondrial ribosome and complex I assembly factor AltMIEF1
KB [auth Ad]Mitochondrial assembly of ribosomal large subunit protein 1
JB [auth a]39S ribosomal protein L42, mitochondrial
IB [auth OX]Mitochondrial inner membrane protein OXA1L
HB [auth s]39S ribosomal protein S30, mitochondrial
GB [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
FB [auth c]39S ribosomal protein L44, mitochondrial
EB [auth A]16S mitochondrial rRNA---
DB [auth Ag]Elongation factor Tu, mitochondrial
E [auth 4]39S ribosomal protein L36, mitochondrial
CB [auth z]Large ribosomal subunit protein uL1m
VA [auth r]39S ribosomal protein S18a, mitochondrial
UA [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1
TA [auth o]Ribosomal protein 63, mitochondrial
QA [auth l]39S ribosomal protein L54, mitochondrial
PA [auth k]Large ribosomal subunit protein mL53-
OA [auth j]39S ribosomal protein L52, mitochondrial
NA [auth i]39S ribosomal protein L51, mitochondrial
D [auth 3]39S ribosomal protein L35, mitochondrial
MA [auth h]39S ribosomal protein L50, mitochondrial-
LA [auth g]39S ribosomal protein L49, mitochondrial
KA [auth b]39S ribosomal protein L43, mitochondrial
JA [auth Z]39S ribosomal protein L30, mitochondrial
IA [auth Y]39S ribosomal protein L47, mitochondrial
HA [auth X]39S ribosomal protein L28, mitochondrial
FA [auth V]39S ribosomal protein L24, mitochondrial
EA [auth U]39S ribosomal protein L23, mitochondrial
DA [auth T]39S ribosomal protein L22, mitochondrial
C [auth 2]39S ribosomal protein L34, mitochondrial
CA [auth S]39S ribosomal protein L21, mitochondrial
BA [auth R]39S ribosomal protein L20, mitochondrial
AA [auth Q]39S ribosomal protein L19, mitochondrial
Z [auth P]39S ribosomal protein L18, mitochondrial
X [auth N]39S ribosomal protein L16, mitochondrial
W [auth M]39S ribosomal protein L15, mitochondrial
V [auth L]39S ribosomal protein L14, mitochondrial
U [auth K]Large ribosomal subunit protein uL13m
T [auth J]39S ribosomal protein L11, mitochondrial
B [auth 1]39S ribosomal protein L33, mitochondrial
S [auth I]39S ribosomal protein L10, mitochondrial
R [auth H]39S ribosomal protein L9, mitochondrial
39S ribosomal protein L12, mitochondrial
O [auth E]39S ribosomal protein L3, mitochondrial
N [auth D]39S ribosomal protein L2, mitochondrial
M [auth f]39S ribosomal protein L48, mitochondrial-
L [auth e]39S ribosomal protein L46, mitochondrial
K [auth d]39S ribosomal protein L45, mitochondrial
J [auth 9]39S ribosomal protein L41, mitochondrial
A [auth 0]39S ribosomal protein L32, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth 5]IPR052482Mitochondrial large ribosomal subunit mL37Family
F [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
P [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
P [auth F]IPR002136Large ribosomal subunit protein uL4Family
P [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Y [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Y [auth O]IPR000456Large ribosomal subunit protein bL17Family
GA [auth W]IPR001684Large ribosomal subunit protein bL27Family
RA [auth m]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
RA [auth m]IPR018615Large ribosomal subunit protein mL55Family
I [auth 8]IPR019192Large ribosomal subunit protein mL40Family
I [auth 8]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
H [auth 7]IPR012676TGS-likeHomologous Superfamily
H [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
H [auth 7]IPR050062Proline-tRNA synthetaseFamily
H [auth 7]IPR004095TGSDomain
H [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
G [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
G [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
G [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
MB [auth Af]IPR006162Phosphopantetheine attachment sitePTM
MB [auth Af]IPR036736ACP-like superfamilyHomologous Superfamily
MB [auth Af]IPR009081Phosphopantetheine binding ACP domainDomain
MB [auth Af]IPR003231Acyl carrier proteinFamily
LB [auth Ae]IPR008011Complex 1 LYR protein domainDomain
LB [auth Ae]IPR045300MIEF1-MP, LYR domainDomain
KB [auth Ad]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
KB [auth Ad]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily
JB [auth a]IPR019346Large ribosomal subunit protein mL42Family
IB [auth OX]IPR001708Membrane insertase YidC/ALB3/OXA1/COX18Family
IB [auth OX]IPR028055Membrane insertase YidC/Oxa/ALB, C-terminalDomain
HB [auth s]IPR039982Large ribosomal subunit protein mL65Family
HB [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
GB [auth p]IPR052104Mitochondrial Release Factor mL62Family
GB [auth p]IPR000352Peptide chain release factor class IDomain
FB [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
FB [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
FB [auth c]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
FB [auth c]IPR014720Double-stranded RNA-binding domainDomain
DB [auth Ag]IPR000795Translational (tr)-type GTP-binding domainDomain
DB [auth Ag]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
DB [auth Ag]IPR004161Translation elongation factor EFTu-like, domain 2Domain
DB [auth Ag]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DB [auth Ag]IPR004160Translation elongation factor EFTu/EF1A, C-terminalDomain
DB [auth Ag]IPR041709Elongation factor Tu (EF-Tu), GTP-binding domainDomain
DB [auth Ag]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DB [auth Ag]IPR033720Elongation factor Tu, domain 2Domain
DB [auth Ag]IPR031157Tr-type G domain, conserved siteConserved Site
DB [auth Ag]IPR004541Translation elongation factor EFTu/EF1A, bacterial/organelleFamily
DB [auth Ag]IPR050055Elongation factor Tu GTPaseFamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR052143Mitochondrial Large Ribosomal Subunit bL36mFamily
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
CB [auth z]IPR005879Large ribosomal subunit protein uL1, mitochondrialFamily
CB [auth z]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
CB [auth z]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
CB [auth z]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
VA [auth r]IPR001648Small ribosomal subunit protein bS18Family
VA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
UA [auth q]IPR018472Large ribosomal subunit protein mL64Family
UA [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
TA [auth o]IPR016576Large ribosomal subunit protein mL63Family
QA [auth l]IPR013870Large ribosomal subunit protein mL54Family
PA [auth k]IPR019716Large ribosomal subunit protein mL53Family
PA [auth k]IPR052473Mitochondrial Large Ribosomal Subunit mL53Family
OA [auth j]IPR034596Large ribosomal subunit protein mL52Family
NA [auth i]IPR019373Large ribosomal subunit protein mL51Family
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
MA [auth h]IPR018305Large ribosomal subunit protein mL50Family
LA [auth g]IPR007740Large ribosomal subunit protein mL49Family
KA [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
KA [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
KA [auth b]IPR039927Large ribosomal subunit protein mL43Family
JA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
JA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
JA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IA [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
IA [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
HA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
HA [auth X]IPR026569Large ribosomal subunit protein bL28Family
HA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
FA [auth V]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
FA [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth V]IPR003256Large ribosomal subunit protein uL24Family
FA [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth V]IPR005824KOWDomain
FA [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
EA [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
DA [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
DA [auth T]IPR001063Large ribosomal subunit protein uL22Family
DA [auth T]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
CA [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
CA [auth S]IPR001787Large ribosomal subunit protein bL21Family
CA [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
BA [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
BA [auth R]IPR005813Large ribosomal subunit protein bL20Family
AA [auth Q]IPR001857Large ribosomal subunit protein bL19Family
AA [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
AA [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Z [auth P]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
Z [auth P]IPR057268Large ribosomal subunit protein uL18Family
X [auth N]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
X [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
X [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
X [auth N]IPR047873Large ribosomal subunit protein uL16Family
W [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
W [auth M]IPR030878Large ribosomal subunit protein uL15Family
W [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth M]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
V [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
V [auth L]IPR000218Large ribosomal subunit protein uL14Family
U [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
U [auth K]IPR005822Large ribosomal subunit protein uL13Family
U [auth K]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
U [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
T [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
T [auth J]IPR000911Ribosomal protein uL11Family
T [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
T [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
T [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
T [auth J]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
B [auth 1]IPR052008Mitochondrial ribosomal protein bL33Family
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
S [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
S [auth I]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
S [auth I]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
R [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
R [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
R [auth H]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
R [auth H]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
R [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
R [auth H]IPR000244Large ribosomal subunit protein bL9Family
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
O [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
O [auth E]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
O [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
O [auth E]IPR000597Large ribosomal subunit protein uL3Family
N [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
N [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
N [auth D]IPR002171Large ribosomal subunit protein uL2Family
M [auth f]IPR027486Small ribosomal subunit protein uS10 domainDomain
M [auth f]IPR027487Large ribosomal subunit protein mL48Family
M [auth f]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
L [auth e]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
L [auth e]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
L [auth e]IPR040008Large ribosomal subunit protein mL46Family
L [auth e]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
K [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
K [auth d]IPR007379Tim44-like domainDomain
K [auth d]IPR051975Mitochondrial Large Ribosomal Subunit mL45Family
J [auth 9]IPR019189Large ribosomal subunit protein mL41Family
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR051991Mitochondrial ribosomal protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth 5]PharosQ9BZE1
P [auth F]PharosQ9BYD3
Y [auth O]PharosQ9NRX2
GA [auth W]PharosQ9P0M9
RA [auth m]PharosQ7Z7F7
I [auth 8]PharosQ9NQ50
H [auth 7]PharosQ9NYK5
MB [auth Af]PharosO14561
LB [auth Ae]PharosL0R8F8
KB [auth Ad]PharosQ96EH3
JB [auth a]PharosQ9Y6G3
IB [auth OX]PharosQ15070
HB [auth s]PharosQ9NP92
GB [auth p]PharosQ14197
FB [auth c]PharosQ9H9J2
DB [auth Ag]PharosP49411
E [auth 4]PharosQ9P0J6
CB [auth z]PharosQ9BYD6
VA [auth r]PharosQ9NVS2
UA [auth q]PharosQ8TAE8
TA [auth o]PharosQ9BQC6
QA [auth l]PharosQ6P161
OA [auth j]PharosQ86TS9
NA [auth i]PharosQ4U2R6
D [auth 3]PharosQ9NZE8
MA [auth h]PharosQ8N5N7
LA [auth g]PharosQ13405
KA [auth b]PharosQ8N983
JA [auth Z]PharosQ8TCC3
IA [auth Y]PharosQ9HD33
HA [auth X]PharosQ13084
FA [auth V]PharosQ96A35
EA [auth U]PharosQ16540
DA [auth T]PharosQ9NWU5
C [auth 2]PharosQ9BQ48
BA [auth R]PharosQ9BYC9
AA [auth Q]PharosP49406
Z [auth P]PharosQ9H0U6
X [auth N]PharosQ9NX20
W [auth M]PharosQ9P015
V [auth L]PharosQ6P1L8
T [auth J]PharosQ9Y3B7
B [auth 1]PharosO75394
S [auth I]PharosQ7Z7H8
R [auth H]PharosQ9BYD2
PharosP52815
O [auth E]PharosP09001
N [auth D]PharosQ5T653
M [auth f]PharosQ96GC5
K [auth d]PharosQ9BRJ2
J [auth 9]PharosQ8IXM3
A [auth 0]PharosQ9BYC8

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SA [auth n]UNK
NB [auth B]1MA Parent Component: A

NB [auth B]2MG Parent Component: G

NB [auth B]PSU Parent Component: U

MB [auth Af]4HH Parent Component: SER

EB [auth A]1MA Parent Component: A

EB [auth A]OMG Parent Component: G

EB [auth A]OMU Parent Component: U

EB [auth A]PSU Parent Component: U

PA [auth k]ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
U [auth K]ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359