Annotations: 9PMS

Epitope editing of CD90 protects hematopoietic stem cells from immunotherapy and enables targeted enrichment for gene therapy

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Antibody light chain	-	-	-
E [auth L]	Antibody light chain	-	-	-
D [auth H]	Antibody heavy chain	-	-	-
C	Thy-1 membrane glycoprotein	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding lipid binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding lipid binding phospholipid binding GPI anchor binding glycolipid binding carbohydrate derivative binding	cell adhesion regulation of biological process regulation of cellular process cell-matrix adhesion regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion biological regulation cell-substrate adhesion cellular process cellular response to stimulus immune response-regulating cell surface receptor signaling pathway response to stimulus signaling cell adhesion regulation of biological process regulation of cellular process cell-matrix adhesion regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion biological regulation cell-substrate adhesion cellular process cellular response to stimulus immune response-regulating cell surface receptor signaling pathway response to stimulus signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of developmental process cellular developmental process cell projection organization regulation of cellular response to stress negative regulation of biological process negative regulation of neuron projection regeneration cell development neuron projection development regeneration neuron projection regeneration cellular component organization neurogenesis multicellular organism development cellular response to stress neuron differentiation regulation of response to stress response to stress cell differentiation anatomical structure development negative regulation of cellular process cellular component organization or biogenesis negative regulation of cell projection organization system development developmental process plasma membrane bounded cell projection organization negative regulation of cellular component organization negative regulation of response to stimulus regulation of cell projection organization negative regulation of developmental process nervous system development negative regulation of neuron projection development generation of neurons neuron development regulation of neuron projection regeneration animal gross anatomical part developmental process regulation of plasma membrane bounded cell projection organization positive regulation of locomotion regulation of cell motility positive regulation of cell migration positive regulation of cell motility regulation of cell migration cellular extravasation cell migration cell motility locomotion positive regulation of cellular process regulation of leukocyte migration positive regulation of leukocyte migration leukocyte migration regulation of locomotion positive regulation of cellular extravasation regulation of cellular extravasation blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity integrin-mediated signaling pathway cell-cell signaling positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization cellular component biogenesis cellular component assembly cell junction assembly positive regulation of cell-substrate adhesion regulation of cell-substrate junction organization focal adhesion assembly positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis positive regulation of cell adhesion positive regulation of cell-matrix adhesion regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly organelle organization cytoskeleton organization regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process negative regulation of catalytic activity regulation of transferase activity regulation of primary metabolic process negative regulation of kinase activity phosphate-containing compound metabolic process negative regulation of protein modification process protein metabolic process protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process negative regulation of molecular function primary metabolic process negative regulation of protein kinase activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification regulation of phosphorylation metabolic process macromolecule metabolic process negative regulation of phosphorylation regulation of metabolic process negative regulation of signaling regulation of signal transduction regulation of antigen receptor-mediated signaling pathway negative regulation of antigen receptor-mediated signaling pathway negative regulation of cell communication regulation of signaling regulation of T cell receptor signaling pathway negative regulation of signal transduction negative regulation of T cell receptor signaling pathway negative regulation of immune system process regulation of cell communication negative regulation of locomotion negative regulation of cell motility negative regulation of cell migration regulation of calcium ion transport regulation of localization positive regulation of cation transmembrane transport positive regulation of calcium ion transport transport monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport localization intercellular transport positive regulation of monoatomic ion transport positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport monoatomic ion transport positive regulation of monoatomic ion transmembrane transport positive regulation of release of sequestered calcium ion into cytosol monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of transport regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport establishment of localization transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport positive regulation of transport regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport axonogenesis regulation of cell differentiation regulation of neurogenesis regulation of cell development cell projection morphogenesis neuron projection morphogenesis negative regulation of axonogenesis negative regulation of multicellular organismal process plasma membrane bounded cell projection morphogenesis cell morphogenesis regulation of nervous system development negative regulation of neurogenesis regulation of axonogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation regulation of anatomical structure morphogenesis regulation of multicellular organismal development axon development cell morphogenesis involved in neuron differentiation negative regulation of cell development cell-cell adhesion heterotypic cell-cell adhesion cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane sensory organ development photoreceptor cell differentiation visual system development retina development in camera-type eye neural retina development eye morphogenesis retinal cone cell differentiation eye photoreceptor cell differentiation animal organ morphogenesis sensory system development photoreceptor cell development camera-type eye morphogenesis eye development eye photoreceptor cell development animal organ development retinal cone cell development camera-type eye photoreceptor cell differentiation retina morphogenesis in camera-type eye sensory organ morphogenesis camera-type eye development regulation of leukocyte activation regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation T cell activation positive regulation of leukocyte activation regulation of cell-cell adhesion positive regulation of T cell activation cell activation regulation of T cell activation regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process regulation of lymphocyte activation	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane apical part of cell plasma membrane region apical plasma membrane cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane apical part of cell plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle membrane microdomain membrane raft presynapse synapse somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection growth cone axon distal axon site of polarized growth glutamatergic synapse cell leading edge leading edge membrane neuron projection membrane dendrite membrane cell projection membrane axolemma main axon neuronal cell body membrane cell body cell body membrane neuronal cell body postsynapse intracellular organelle intracellular anatomical structure endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system
A	Antibody heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C	IPR013106	Immunoglobulin V-set domain	Domain
C	IPR013151	Immunoglobulin-like beta-sandwich domain	Domain
C	IPR033292	Thy-1 membrane glycoprotein	Family
C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C	IPR007110	Immunoglobulin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	: P04216	retinal disease malignant glioma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma adrenal cortex carcinoma Pick disease Becker muscular dystrophy cutaneous lupus erythematosus endometriosis glioblastoma interstitial lung disease lung adenocarcinoma malignant mesothelioma non-small cell lung carcinoma retinal disease malignant glioma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma adrenal cortex carcinoma Pick disease Becker muscular dystrophy cutaneous lupus erythematosus endometriosis glioblastoma interstitial lung disease lung adenocarcinoma malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor primitive neuroectodermal tumor breast cancer transitional cell carcinoma Down syndrome esophageal adenocarcinoma hepatocellular carcinoma ischemia reperfusion injury malignant ependymoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atypical teratoid rhabdoid tumor Reperfusion Injury cancer ulcerative colitis Duchenne muscular dystrophy gastric carcinoma interstitial cystitis large cell medulloblastoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9PMS | pdb_00009pms

Epitope editing of CD90 protects hematopoietic stem cells from immunotherapy and enables targeted enrichment for gene therapy

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation