9P0E | pdb_00009p0e

Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]23S rRNA---
B [auth 2]16S rRNA---
C [auth 3]5S rRNA---
D [auth 4]50S ribosomal protein L38- - -
E [auth 5]30S ribosomal protein S22- - -
F [auth 6]rpsU mRNA---
G [auth A]fMet-tRNA---
H [auth B]50S ribosomal protein L2
I [auth C]50S ribosomal protein L3
J [auth D]50S ribosomal protein L4
K [auth E]50S ribosomal protein L5---
L [auth F]50S ribosomal protein L6
M [auth G]50S ribosomal protein L9
N [auth J]50S ribosomal protein L13
O [auth K]50S ribosomal protein L14
P [auth L]50S ribosomal protein L15
Q [auth M]50S ribosomal protein L16
R [auth N]50S ribosomal protein L17
S [auth O]50S ribosomal protein L18
T [auth P]50S ribosomal protein L19
U [auth Q]50S ribosomal protein L20
V [auth R]50S ribosomal protein L21
W [auth S]50S ribosomal protein L22
X [auth T]50S ribosomal protein L23
Y [auth U]50S ribosomal protein L24
Z [auth V]50S ribosomal protein L25
AA [auth W]50S ribosomal protein L27
BA [auth X]50S ribosomal protein L28
CA [auth Y]50S ribosomal protein L29
DA [auth Z]50S ribosomal protein L30
EA [auth a]50S ribosomal protein L31
FA [auth b]50S ribosomal protein L32
GA [auth c]50S ribosomal protein L33
HA [auth d]50S ribosomal protein L34
IA [auth e]50S ribosomal protein L35
JA [auth f]50S ribosomal protein L36
KA [auth h]30S ribosomal protein S3
LA [auth i]30S ribosomal protein S4
MA [auth j]30S ribosomal protein S5
NA [auth k]30S ribosomal protein S6
OA [auth l]30S ribosomal protein S7
PA [auth m]30S ribosomal protein S8
QA [auth n]30S ribosomal protein S9
RA [auth o]30S ribosomal protein S10
SA [auth p]30S ribosomal protein S11
TA [auth q]30S ribosomal protein S12---
UA [auth r]30S ribosomal protein S13
VA [auth s]30S ribosomal protein S14
WA [auth t]30S ribosomal protein S15
XA [auth u]30S ribosomal protein S16
YA [auth v]30S ribosomal protein S17
ZA [auth w]30S ribosomal protein S18
AB [auth x]30S ribosomal protein S19
BB [auth y]30S ribosomal protein S20

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth 4]IPR025379Protein of unknown function DUF4295Family
H [auth B]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
H [auth B]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
H [auth B]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth B]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth B]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
H [auth B]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
H [auth B]IPR002171Large ribosomal subunit protein uL2Family
I [auth C]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth C]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
I [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
I [auth C]IPR000597Large ribosomal subunit protein uL3Family
J [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
J [auth D]IPR002136Large ribosomal subunit protein uL4Family
J [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
L [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth F]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
L [auth F]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
M [auth G]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
M [auth G]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
M [auth G]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
M [auth G]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
M [auth G]IPR000244Large ribosomal subunit protein bL9Family
N [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
N [auth J]IPR005822Large ribosomal subunit protein uL13Family
N [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
N [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
O [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
O [auth K]IPR000218Large ribosomal subunit protein uL14Family
O [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
O [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
P [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth L]IPR030878Large ribosomal subunit protein uL15Family
P [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
P [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
P [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
Q [auth M]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
Q [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
Q [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
Q [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
Q [auth M]IPR047873Large ribosomal subunit protein uL16Family
R [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
R [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
R [auth N]IPR000456Large ribosomal subunit protein bL17Family
S [auth O]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
S [auth O]IPR057268Large ribosomal subunit protein uL18Family
S [auth O]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
T [auth P]IPR001857Large ribosomal subunit protein bL19Family
T [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
T [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
U [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
U [auth Q]IPR005813Large ribosomal subunit protein bL20Family
V [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
V [auth R]IPR001787Large ribosomal subunit protein bL21Family
V [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
V [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
W [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
W [auth S]IPR001063Large ribosomal subunit protein uL22Family
W [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
W [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
X [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
X [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
X [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
Y [auth U]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
Y [auth U]IPR003256Large ribosomal subunit protein uL24Family
Y [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Y [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Y [auth U]IPR005824KOWDomain
Y [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Z [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
Z [auth V]IPR001021Ribosomal protein bL25, long-formFamily
Z [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
Z [auth V]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
Z [auth V]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
Z [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
Z [auth V]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
AA [auth W]IPR001684Large ribosomal subunit protein bL27Family
AA [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
BA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
BA [auth X]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
BA [auth X]IPR026569Large ribosomal subunit protein bL28Family
BA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
CA [auth Y]IPR001854Large ribosomal subunit protein uL29Family
CA [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
CA [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
DA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
DA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
EA [auth a]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
EA [auth a]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
EA [auth a]IPR027493Large ribosomal subunit protein bL31 type BFamily
EA [auth a]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
FA [auth b]IPR002677Large ribosomal subunit protein bL32Family
FA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth b]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
GA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth c]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
GA [auth c]IPR001705Large ribosomal subunit protein bL33Family
HA [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
HA [auth d]IPR000271Large ribosomal subunit protein bL34Family
IA [auth e]IPR021137Large ribosomal subunit protein bL35-likeFamily
IA [auth e]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
IA [auth e]IPR001706Large ribosomal subunit protein bL35Family
IA [auth e]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
JA [auth f]IPR000473Large ribosomal subunit protein bL36Family
JA [auth f]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
JA [auth f]IPR047621Ribosomal protein L36, bacteriaFamily
KA [auth h]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
KA [auth h]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
KA [auth h]IPR057258Small ribosomal subunit protein uS3Family
KA [auth h]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
KA [auth h]IPR004087K Homology domainDomain
KA [auth h]IPR004044K Homology domain, type 2Domain
KA [auth h]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
KA [auth h]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
KA [auth h]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
LA [auth i]IPR002942RNA-binding S4 domainDomain
LA [auth i]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
LA [auth i]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
LA [auth i]IPR022801Small ribosomal subunit protein uS4Family
LA [auth i]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
MA [auth j]IPR000851Small ribosomal subunit protein uS5Family
MA [auth j]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
MA [auth j]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
MA [auth j]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
MA [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MA [auth j]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
MA [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
NA [auth k]IPR000529Small ribosomal subunit protein bS6Family
NA [auth k]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
NA [auth k]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
NA [auth k]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
OA [auth l]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
OA [auth l]IPR000235Small ribosomal subunit protein uS7Family
OA [auth l]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
OA [auth l]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
OA [auth l]IPR023798Small ribosomal subunit protein uS7 domainDomain
PA [auth m]IPR000630Small ribosomal subunit protein uS8Family
PA [auth m]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
PA [auth m]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
QA [auth n]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
QA [auth n]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
QA [auth n]IPR000754Small ribosomal subunit protein uS9Family
QA [auth n]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
RA [auth o]IPR001848Small ribosomal subunit protein uS10Family
RA [auth o]IPR027486Small ribosomal subunit protein uS10 domainDomain
RA [auth o]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
RA [auth o]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
SA [auth p]IPR001971Small ribosomal subunit protein uS11Family
SA [auth p]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
SA [auth p]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
SA [auth p]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
UA [auth r]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
UA [auth r]IPR001892Small ribosomal subunit protein uS13Family
UA [auth r]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
UA [auth r]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
UA [auth r]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
VA [auth s]IPR001209Small ribosomal subunit protein uS14Family
VA [auth s]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
VA [auth s]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
VA [auth s]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
WA [auth t]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
WA [auth t]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
WA [auth t]IPR000589Small ribosomal subunit protein uS15Family
XA [auth u]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
XA [auth u]IPR000307Small ribosomal subunit protein bS16Family
YA [auth v]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
YA [auth v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
YA [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
YA [auth v]IPR000266Small ribosomal subunit protein uS17Family
ZA [auth w]IPR001648Small ribosomal subunit protein bS18Family
ZA [auth w]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
AB [auth x]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
AB [auth x]IPR002222Small ribosomal subunit protein uS19Family
AB [auth x]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
AB [auth x]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
BB [auth y]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
BB [auth y]IPR002583Small ribosomal subunit protein bS20Family