9OP4 | pdb_00009op4

Herpes simplex virus type 1 (HSV-1) A-capsid pUL6 portal protein, dodecameric complex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01763	Herpesvirus UL6 like (Herpes_UL6)	Herpesvirus UL6 like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Capsid scaffolding protein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity identical protein binding protein binding binding	virion assembly viral process viral capsid assembly viral life cycle nuclear capsid assembly proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process exit from host cell biological process involved in interspecies interaction between organisms viral release from host cell virion assembly viral process viral capsid assembly viral life cycle nuclear capsid assembly proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process exit from host cell biological process involved in interspecies interaction between organisms viral release from host cell biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm
M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l]	Capsid portal protein	-	cellular component organization organelle organization chromosome organization cellular process cellular component organization or biogenesis	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR035443	Herpesvirus protease superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001847	Peptidase S21	Family
M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l]	IPR002660	Herpesvirus portal protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.