9NQL | pdb_00009nql

Cryo electron microscopic analysis of the adduct of syringolin analog with the Mtb 20S proteasome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P [auth N]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
O [auth M]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
N [auth L]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
M [auth K]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
L [auth J]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
K [auth I]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Class II glutamine amidotransferases	8085567	3000131	SCOP2B (2022-06-29)
Z [auth X]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
Y [auth W]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
X [auth V]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
W [auth U]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
V [auth T]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
U [auth S]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
T [auth R]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
S [auth Q]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
R [auth P]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
Q [auth O]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
BA [auth Z]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
AA [auth Y]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	Class II glutamine amidotransferases	8079173	3000131	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N]	PF00227	Proteasome subunit (Proteasome)	Proteasome subunit	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].	Domain
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	PF00227	Proteasome subunit (Proteasome)	Proteasome subunit	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N]	Proteasome subunit alpha	peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity hydrolase activity catalytic activity endopeptidase activity threonine-type endopeptidase activity	catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteasomal protein catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex proteasome core complex, alpha-subunit complex catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome core complex intracellular protein-containing complex
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	Proteasome subunit beta	peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity hydrolase activity catalytic activity endopeptidase activity threonine-type endopeptidase activity	catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteasomal protein catabolic process	protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome core complex intracellular protein-containing complex proteasome core complex, beta-subunit complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N]	IPR022296	Proteasome, alpha subunit, bacterial	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N]	IPR023332	Proteasome alpha-type subunit	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N]	IPR001353	Proteasome, subunit alpha/beta	Family
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR023333	Proteasome B-type subunit	Family
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR022483	Proteasome subunit beta, actinobacteria	Family
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], Q [auth O], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR001353	Proteasome, subunit alpha/beta	Family