9NAW | pdb_00009naw

H-1 Parvovirus VLP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth 8]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
BB [auth u]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
EA [auth 4]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
FA [auth 5]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
GA [auth 6]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
HB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
IA [auth b]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
T [auth S]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
UA [auth n]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
WA [auth p]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
YA [auth r]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
Z [auth Y]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
ZA [auth s]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
Y [auth X]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
XA [auth q]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
X [auth W]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
W [auth V]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
VA [auth o]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
V [auth U]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
U [auth T]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
TA [auth m]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
SA [auth l]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
RA [auth k]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
QA [auth j]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
PA [auth i]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
OA [auth h]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
NA [auth g]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
MA [auth f]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
LA [auth e]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
KA [auth d]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
JA [auth c]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
HA [auth a]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
GB [auth z]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
FB [auth y]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
EB [auth x]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
DB [auth w]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
DA [auth 3]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
CB [auth v]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
CA [auth 2]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
BA [auth 1]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
AB [auth t]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
AA [auth Z]	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8073281	3000931	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	PF00740	Parvovirus coat protein VP1/VP2 (VP1_2)	Parvovirus coat protein VP1/VP2	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-te ...	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal. VP2 is involved in packaging of the viral DNA [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	Major capsid protein	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction viral penetration into host nucleus intracellular transport of virus transport of virus symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction viral penetration into host nucleus intracellular transport of virus transport of virus symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization clathrin-dependent endocytosis cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus transport of viral material towards nucleus	host cellular component cellular anatomical structure host cell other organism part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily