| IPR000236 | Transactivation protein X | Family |
| IPR011513 | Non-structural maintenance of chromosomes element 1 | Family |
| IPR002219 | Protein kinase C-like, phorbol ester/diacylglycerol-binding domain | Domain |
| IPR014857 | Non-structural maintenance of chromosomes element 1, RING C4HC3-type | Domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
| IPR001841 | Zinc finger, RING-type | Domain |
| IPR038729 | Rad50/SbcC-type AAA domain | Domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
| IPR004181 | Zinc finger, MIZ-type | Domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
| IPR026846 | E3 SUMO-protein ligase Nse2 (Mms21) | Family |
| IPR051031 | RING-box E3 Ubiquitin Ligase | Family |
| IPR024766 | Zinc finger, RING-H2-type | Domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
| IPR001841 | Zinc finger, RING-type | Domain |
| IPR045093 | Cullin | Family |
| IPR016158 | Cullin homology domain | Domain |
| IPR016157 | Cullin, conserved site | Conserved Site |
| IPR059120 | Cullin-like, alpha+beta domain | Domain |
| IPR001373 | Cullin, N-terminal | Domain |
| IPR019559 | Cullin, neddylation domain | Domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| IPR036317 | Cullin homology domain superfamily | Homologous Superfamily |
| IPR016159 | Cullin repeat-like-containing domain superfamily | Homologous Superfamily |
| IPR041899 | MAGE homology domain, winged helix WH2 motif | Homologous Superfamily |
| IPR002190 | MAGE homology domain | Domain |
| IPR041898 | MAGE homology domain, winged helix WH1 motif | Homologous Superfamily |
| IPR037445 | Melanoma-associated antigen | Family |
| IPR014854 | Non-structural maintenance of chromosome element 4, C-terminal | Domain |
| IPR027786 | Nse4/EID family | Family |
| IPR029225 | Nse4/EID protein, Nse3/MAGE-binding domain | Domain |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
| IPR058543 | RSE1/DDB1/CPSF1, second beta-propeller | Domain |
| IPR004871 | RSE1/DDB1/CPSF1, C-terminal | Domain |
| IPR050358 | RSE1/DDB1/CPSF1 | Family |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
| IPR018846 | RSE1/DDB1/CPSF1, first beta-propeller | Domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
| IPR003395 | RecF/RecN/SMC, N-terminal | Domain |