9L16 | pdb_00009l16

A local Cryo_EM structure of CCR7 complex with CCL21


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyInterleukin 8-like chemokines 8061445 3001955 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth R]e9l16R1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: N-terminal domain of the delta subunit of the F1F0-ATP synthaseT: MbtHF:ECOD (20:10:01)
A [auth L]e9l16L1 A: ATPD N-terminal domain-likeX: N-terminal domain of the delta subunit of the F1F0-ATP synthaseH: Galactose-binding domain-likeT: Ank, TRP_2, Ank_2, Ank_3F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
A [auth L]PF00048Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)Small cytokines (intecrine/chemokine), interleukin-8 likeIncludes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth R]C-C chemokine receptor type 7
A [auth L]C-C motif chemokine 21