9KN5 | pdb_00009kn5

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth SH]40S ribosomal protein S7
H [auth SG]40S ribosomal protein S6
G [auth SF]40S ribosomal protein S5
F [auth SE]40S ribosomal protein S4, X isoform
E [auth SD]40S ribosomal protein S3
TA [auth 3l]Eukaryotic translation initiation factor 3 subunit L
SA [auth 3k]Eukaryotic translation initiation factor 3 subunit K
RA [auth 3d]Eukaryotic translation initiation factor 3 subunit D
QA [auth 3h]Eukaryotic translation initiation factor 3 subunit H
PA [auth 3c]Eukaryotic translation initiation factor 3 subunit C
OA [auth 3e]Eukaryotic translation initiation factor 3 subunit E
NA [auth 3a]Eukaryotic translation initiation factor 3 subunit A
D [auth SC]40S ribosomal protein S2
MA [auth 3f]Eukaryotic translation initiation factor 3 subunit F
LA [auth 3m]Eukaryotic translation initiation factor 3 subunit M
KA [auth zz]Chains: zz---
JA [auth S2]Chains: S2---
IA [auth Ln]60S ribosomal protein L41
HA [auth Sg]Receptor of activated protein C kinase 1
GA [auth sh]Ubiquitin-40S ribosomal protein S27a
FA [auth Se]40S ribosomal protein S30
EA [auth Sd]40S ribosomal protein S29
DA [auth Sc]40S ribosomal protein S28
C [auth SB]40S ribosomal protein S3a
CA [auth Sb]40S ribosomal protein S27
BA [auth Sa]40S ribosomal protein S26
AA [auth SZ]40S ribosomal protein S25
Z [auth SY]40S ribosomal protein S24
Y [auth SX]40S ribosomal protein S23
X [auth SW]40S ribosomal protein S15a
W [auth SV]40S ribosomal protein S21
V [auth SU]40S ribosomal protein S20
U [auth ST]40S ribosomal protein S19
T [auth SS]40S ribosomal protein S18
B [auth SA]Small ribosomal subunit protein uS2
S [auth SR]40S ribosomal protein S17
R [auth SQ]40S ribosomal protein S16
Q [auth SP]40S ribosomal protein S15
P [auth SO]40S ribosomal protein S14
O [auth SN]40S ribosomal protein S13
N [auth Sf]40S ribosomal protein S12
M [auth SL]40S ribosomal protein S11
L [auth SK]40S ribosomal protein S10
K [auth SJ]40S ribosomal protein S9
J [auth SI]40S ribosomal protein S8
A [auth 1A]Eukaryotic translation initiation factor 1A, X-chromosomal

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth SH]IPR000554Small ribosomal subunit protein eS7Family
I [auth SH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
H [auth SG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth SG]IPR001377Small ribosomal subunit protein eS6Family
H [auth SG]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth SF]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth SF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth SF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth SF]IPR000235Small ribosomal subunit protein uS7Family
G [auth SF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
F [auth SE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth SE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
F [auth SE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth SE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth SE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth SE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
F [auth SE]IPR002942RNA-binding S4 domainDomain
F [auth SE]IPR000876Small ribosomal subunit protein eS4Family
F [auth SE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth SE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth SE]IPR005824KOWDomain
E [auth SD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
E [auth SD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth SD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth SD]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
E [auth SD]IPR004044K Homology domain, type 2Domain
E [auth SD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth SD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
TA [auth 3l]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
TA [auth 3l]IPR000717Proteasome component (PCI) domainDomain
TA [auth 3l]IPR019382Translation initiation factor 3 complex subunit LFamily
SA [auth 3k]IPR016024Armadillo-type foldHomologous Superfamily
SA [auth 3k]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
SA [auth 3k]IPR033464CSN8/PSMD8/EIF3KDomain
SA [auth 3k]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
SA [auth 3k]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
SA [auth 3k]IPR000717Proteasome component (PCI) domainDomain
SA [auth 3k]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
RA [auth 3d]IPR007783Eukaryotic translation initiation factor 3 subunit DFamily
QA [auth 3h]IPR027524Eukaryotic translation initiation factor 3 subunit HFamily
QA [auth 3h]IPR045810eIF3h, C-terminalDomain
QA [auth 3h]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
QA [auth 3h]IPR037518MPN domainDomain
QA [auth 3h]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
PA [auth 3c]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
PA [auth 3c]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
PA [auth 3c]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
PA [auth 3c]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
PA [auth 3c]IPR000717Proteasome component (PCI) domainDomain
OA [auth 3e]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
OA [auth 3e]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
OA [auth 3e]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
OA [auth 3e]IPR000717Proteasome component (PCI) domainDomain
NA [auth 3a]IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
NA [auth 3a]IPR054711eIF3a, PCI domain, TPR-like regionDomain
NA [auth 3a]IPR000717Proteasome component (PCI) domainDomain
D [auth SC]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
D [auth SC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth SC]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth SC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
D [auth SC]IPR000851Small ribosomal subunit protein uS5Family
D [auth SC]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth SC]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
MA [auth 3f]IPR027531Eukaryotic translation initiation factor 3 subunit FFamily
MA [auth 3f]IPR024969EIF3F/CSN6-like, C-terminalDomain
MA [auth 3f]IPR037518MPN domainDomain
MA [auth 3f]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
LA [auth 3m]IPR016024Armadillo-type foldHomologous Superfamily
LA [auth 3m]IPR040750eIF3 subunit M, C-terminal helix domainDomain
LA [auth 3m]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LA [auth 3m]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
LA [auth 3m]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
LA [auth 3m]IPR000717Proteasome component (PCI) domainDomain
IA [auth Ln]IPR007836Large ribosomal subunit protein eS32Family
HA [auth Sg]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth Sg]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
HA [auth Sg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth Sg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
HA [auth Sg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth Sg]IPR001680WD40 repeatRepeat
GA [auth sh]IPR019954Ubiquitin conserved siteConserved Site
GA [auth sh]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
GA [auth sh]IPR050158Ubiquitin and ubiquitin-likeFamily
GA [auth sh]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth sh]IPR000626Ubiquitin-like domainDomain
GA [auth sh]IPR002906Small ribosomal subunit protein eS31Domain
GA [auth sh]IPR019956Ubiquitin domainDomain
GA [auth sh]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
FA [auth Se]IPR019954Ubiquitin conserved siteConserved Site
FA [auth Se]IPR006846Small ribosomal subunit protein eS30Family
FA [auth Se]IPR039415Ubiquitin-like protein FUBIDomain
FA [auth Se]IPR000626Ubiquitin-like domainDomain
FA [auth Se]IPR019956Ubiquitin domainDomain
FA [auth Se]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
EA [auth Sd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
EA [auth Sd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
EA [auth Sd]IPR001209Small ribosomal subunit protein uS14Family
EA [auth Sd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
DA [auth Sc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
DA [auth Sc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth Sc]IPR000289Small ribosomal subunit protein eS28Family
C [auth SB]IPR001593Small ribosomal subunit protein eS1Family
C [auth SB]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
C [auth SB]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
CA [auth Sb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
CA [auth Sb]IPR000592Small ribosomal subunit protein eS27Family
CA [auth Sb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth Sa]IPR047864Ribosomal protein eS26, conserved siteConserved Site
BA [auth Sa]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
BA [auth Sa]IPR000892Small ribosomal subunit protein eS26Family
AA [auth SZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AA [auth SZ]IPR004977Small ribosomal subunit protein eS25Family
Z [auth SY]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
Z [auth SY]IPR001976Small ribosomal subunit protein eS24Family
Z [auth SY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth SY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Y [auth SX]IPR006032Small ribosomal subunit protein uS12Family
Y [auth SX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth SX]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
X [auth SW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
X [auth SW]IPR000630Small ribosomal subunit protein uS8Family
X [auth SW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
W [auth SV]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
W [auth SV]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
W [auth SV]IPR001931Small ribosomal subunit protein eS21Family
V [auth SU]IPR027486Small ribosomal subunit protein uS10 domainDomain
V [auth SU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
V [auth SU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
V [auth SU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
V [auth SU]IPR001848Small ribosomal subunit protein uS10Family
U [auth ST]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
U [auth ST]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
U [auth ST]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
U [auth ST]IPR001266Small ribosomal subunit protein eS19Family
T [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
T [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
T [auth SS]IPR001892Small ribosomal subunit protein uS13Family
T [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
B [auth SA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth SA]IPR001865Small ribosomal subunit protein uS2Family
B [auth SA]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
B [auth SA]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
B [auth SA]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
B [auth SA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth SA]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
S [auth SR]IPR001210Small ribosomal subunit protein eS17Family
S [auth SR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
S [auth SR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
R [auth SQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
R [auth SQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
R [auth SQ]IPR000754Small ribosomal subunit protein uS9Family
R [auth SQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Q [auth SP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Q [auth SP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth SP]IPR002222Small ribosomal subunit protein uS19Family
Q [auth SP]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
P [auth SO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
P [auth SO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
P [auth SO]IPR001971Small ribosomal subunit protein uS11Family
O [auth SN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth SN]IPR000589Small ribosomal subunit protein uS15Family
O [auth SN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
O [auth SN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
N [auth Sf]IPR000530Small ribosomal subunit protein eS12Family
N [auth Sf]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth Sf]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
N [auth Sf]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth SL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth SL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth SL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth SL]IPR000266Small ribosomal subunit protein uS17Family
M [auth SL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
L [auth SK]IPR037447Small ribosomal subunit protein eS10Family
L [auth SK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
L [auth SK]IPR005326Plectin/eS10, N-terminalDomain
K [auth SJ]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
K [auth SJ]IPR002942RNA-binding S4 domainDomain
K [auth SJ]IPR022801Small ribosomal subunit protein uS4Family
K [auth SJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
K [auth SJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
K [auth SJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
J [auth SI]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
J [auth SI]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
J [auth SI]IPR001047Small ribosomal subunit protein eS8Family
J [auth SI]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
A [auth 1A]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
A [auth 1A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth 1A]IPR006196RNA-binding domain, S1, IF1 typeDomain
A [auth 1A]IPR001253Translation initiation factor 1A (eIF-1A)Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth SH]PharosP62081
H [auth SG]PharosP62753
G [auth SF]PharosP46782
F [auth SE]PharosP62701
E [auth SD]PharosP23396
SA [auth 3k]PharosQ9UBQ5
RA [auth 3d]PharosO15371
QA [auth 3h]PharosO15372
PA [auth 3c]PharosQ99613
OA [auth 3e]PharosP60228
NA [auth 3a]PharosQ14152
D [auth SC]PharosP15880
MA [auth 3f]PharosO00303
LA [auth 3m]PharosQ7L2H7
IA [auth Ln]PharosP62945
HA [auth Sg]PharosP63244
GA [auth sh]PharosP62979
FA [auth Se]PharosP62861
EA [auth Sd]PharosP62273
DA [auth Sc]PharosP62857
CA [auth Sb]PharosP42677
BA [auth Sa]PharosP62854
AA [auth SZ]PharosP62851
Z [auth SY]PharosP62847
Y [auth SX]PharosP62266
X [auth SW]PharosP62244
W [auth SV]PharosP63220
V [auth SU]PharosP60866
U [auth ST]PharosP39019
T [auth SS]PharosP62269
B [auth SA]PharosP08865
S [auth SR]PharosP08708
R [auth SQ]PharosP62249
Q [auth SP]PharosP62841
P [auth SO]PharosP62263
O [auth SN]PharosP62277
N [auth Sf]PharosP25398
M [auth SL]PharosP62280
L [auth SK]PharosP46783
K [auth SJ]PharosP46781
J [auth SI]PharosP62241
A [auth 1A]PharosP47813