9JOR | pdb_00009jor

structure of phage T4 topoisomerase II central domain bound with DNA

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], D [auth B]	PF16898	C-terminal associated domain of TOPRIM (TOPRIM_C)	C-terminal associated domain of TOPRIM	-	Family
A [auth C], C [auth D]	PF00521	DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV)	DNA gyrase/topoisomerase IV, subunit A	This entry represents a domain found in type IIA topoisomerases, such as bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA), and mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that r ...	This entry represents a domain found in type IIA topoisomerases, such as bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA), and mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F	DNA (5'-D(PAPTPAPTPAPTPGPTPGPTPAPTPAPTPAPTPAPCPAPCPAPCPAPT)-3')	-	-	-
E	DNA (5'-D(PTPGPTPGPTPGPTPAPTPAPTPAPTPAPCPAPCPAPTPAPTPAPTPA)-3')	-	-	-
B [auth A], D [auth B]	DNA topoisomerase large subunit,DNA topoisomerase small subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA topoisomerase activity DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity catalytic activity macromolecular conformation isomerase activity ATP-dependent activity	cellular component organization organelle organization nuclear chromosome segregation chromosome organization sister chromatid segregation cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process primary metabolic process DNA conformation change DNA metabolic process nucleic acid metabolic process cellular component organization organelle organization nuclear chromosome segregation chromosome organization sister chromatid segregation cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process primary metabolic process DNA conformation change DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA topological change metabolic process macromolecule metabolic process	protein-containing complex DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex catalytic complex
A [auth C], C [auth D]	DNA topoisomerase medium subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA topoisomerase activity DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity catalytic activity macromolecular conformation isomerase activity ATP-dependent activity	cellular component organization organelle organization nuclear chromosome segregation chromosome organization sister chromatid segregation cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process primary metabolic process DNA conformation change DNA metabolic process nucleic acid metabolic process cellular component organization organelle organization nuclear chromosome segregation chromosome organization sister chromatid segregation cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process primary metabolic process DNA conformation change DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA topological change metabolic process macromolecule metabolic process	protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], D [auth B]	IPR018522	DNA topoisomerase, type IIA, conserved site	Conserved Site
B [auth A], D [auth B]	IPR013506	DNA topoisomerase, type IIA, subunit B, domain 2	Domain
B [auth A], D [auth B]	IPR013760	DNA topoisomerase, type IIA-like domain superfamily	Homologous Superfamily
B [auth A], D [auth B]	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
B [auth A], D [auth B]	IPR013759	DNA topoisomerase, type IIA, subunit B, C-terminal	Homologous Superfamily
B [auth A], D [auth B]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
B [auth A], D [auth B]	IPR001241	DNA topoisomerase, type IIA	Family
B [auth A], D [auth B]	IPR050634	DNA Topoisomerase II	Family
B [auth A], D [auth B]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
B [auth A], D [auth B]	IPR013759	DNA topoisomerase, type IIA, subunit B, C-terminal	Homologous Superfamily
B [auth A], D [auth B]	IPR031660	C-terminal associated domain of TOPRIM	Domain
B [auth A], D [auth B]	IPR013760	DNA topoisomerase, type IIA-like domain superfamily	Homologous Superfamily
B [auth A], D [auth B]	IPR050634	DNA Topoisomerase II	Family
A [auth C], C [auth D]	IPR001154	DNA topoisomerase II, eukaryotic-type	Family
A [auth C], C [auth D]	IPR013760	DNA topoisomerase, type IIA-like domain superfamily	Homologous Superfamily
A [auth C], C [auth D]	IPR050634	DNA Topoisomerase II	Family
A [auth C], C [auth D]	IPR013757	DNA topoisomerase, type IIA, alpha-helical domain superfamily	Homologous Superfamily
A [auth C], C [auth D]	IPR013758	DNA topoisomerase, type IIA, domain A, alpha-beta	Homologous Superfamily
A [auth C], C [auth D]	IPR002205	DNA topoisomerase, type IIA, domain A	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.