9J6V | pdb_00009j6v

Cryo-EM structure of human dopamine transporter in complex with nefazodone

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Beta-Casp	e9j6vA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00209	Sodium:neurotransmitter symporter family (SNF)	Sodium:neurotransmitter symporter family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sodium-dependent dopamine transporter	binding amine binding protein binding signaling receptor binding protein phosphatase binding phosphatase binding enzyme binding protein phosphatase 2A binding monoatomic cation transmembrane transporter activity monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity solute:sodium symporter activity solute:monoatomic cation symporter activity monoatomic anion:sodium symporter activity binding amine binding protein binding signaling receptor binding protein phosphatase binding phosphatase binding enzyme binding protein phosphatase 2A binding monoatomic cation transmembrane transporter activity monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity solute:sodium symporter activity solute:monoatomic cation symporter activity monoatomic anion:sodium symporter activity monoamine transmembrane transporter activity sodium ion transmembrane transporter activity sodium:chloride symporter activity monoatomic anion:monoatomic cation symporter activity secondary active transmembrane transporter activity chloride:monoatomic cation symporter activity active transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity symporter activity dopamine:sodium symporter activity neurotransmitter transmembrane transporter activity norepinephrine:sodium symporter activity protease binding heterocyclic compound binding small molecule binding cation binding ion binding catecholamine binding dopamine binding protein-containing complex binding metal ion binding	localization transport neurotransmitter transport establishment of localization response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organismal process sensory organ development eye development animal organ development visual system development anatomical structure regression localization transport neurotransmitter transport establishment of localization response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organismal process sensory organ development eye development animal organ development visual system development anatomical structure regression anatomical structure morphogenesis multicellular organism development hyaloid vascular plexus regression anatomical structure development camera-type eye development sensory system development animal gross anatomical part developmental process system development response to metal ion response to iron ion response to alcohol response to oxygen-containing compound response to ethanol monoatomic ion transmembrane transport sodium ion transmembrane transport metal ion transport monoatomic cation transmembrane transport transmembrane transport monoatomic ion transport cellular process monoatomic cation transport sodium ion transport nitrogen compound transport organic hydroxy compound transport dopamine uptake catecholamine uptake amino acid transport response to organophosphorus response to nitrogen compound response to purine-containing compound response to cAMP import into cell cellular localization signaling cell communication dopamine uptake involved in synaptic transmission synaptic signaling establishment of localization in cell neurotransmitter reuptake trans-synaptic signaling regulation of biological process biological regulation cell-cell signaling chemical synaptic transmission anterograde trans-synaptic signaling neurotransmitter uptake synaptic transmission, dopaminergic response to nicotine	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface presynapse presynaptic membrane membrane microdomain cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface presynapse presynaptic membrane membrane microdomain membrane raft dopaminergic synapse intracellular anatomical structure cytoplasm protein-containing complex plasma membrane protein complex plasma membrane raft membrane protein complex caveola flotillin complex cell projection neuron projection plasma membrane bounded cell projection somatodendritic compartment cell body neuronal cell body axon axon terminus distal axon neuron projection terminus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000175	Sodium:neurotransmitter symporter	Family
A	IPR002436	Sodium:neurotransmitter symporter, dopamine	Family
A	IPR037272	Sodium:neurotransmitter symporter superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q01959	Parkinson disease dementia dystonic disorder schizophrenia attention deficit hyperactivity disorder, inattentive type cocaine dependence nervous system disorder tic disorder depressive disorder alcohol abuse amphetamine abuse transient tic disorder parkinsonism-dystonia, infantile cocaine abuse Memory Disorders Parkinson disease dementia dystonic disorder schizophrenia attention deficit hyperactivity disorder, inattentive type cocaine dependence nervous system disorder tic disorder depressive disorder alcohol abuse amphetamine abuse transient tic disorder parkinsonism-dystonia, infantile cocaine abuse Memory Disorders sleep-wake disorder nicotine dependence anxiety disorder parkinsonism-dystonia, infantile, 1 seasonal affective disorder colorectal cancer narcolepsy squamous cell lung carcinoma drug psychosis Alzheimer disease estrogen-receptor negative breast cancer obesity disorder toxic encephalopathy benign prostatic hyperplasia major depressive disorder breast carcinoma medulloblastoma chronic tic disorder skin basal cell carcinoma cutaneous melanoma nasopharyngeal disease neurodegenerative disease testicular cancer exocrine pancreatic carcinoma oral cavity cancer intellectual disability lung adenocarcinoma progressive supranuclear palsy binge eating disorder malignant mesothelioma melanoma colorectal adenoma delirium mood disorder multiple system atrophy diabetes mellitus substance abuse essential tremor testicular germ cell tumor osteosarcoma uveal melanoma lung carcinoma bipolar disorder

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.