Annotations: 9IVS

Cryo-EM structure of the CHIKV nsP3 peptide in complex with the NTF2L domain of G3BP1 (Conformation III)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V [auth F]	Beta-Casp	e9ivsF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
U [auth H]	Beta-Casp	e9ivsH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
T [auth G]	Beta-Casp	e9ivsG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
S [auth E]	Beta-Casp	e9ivsE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
P [auth S]	Beta-Casp	e9ivsS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
O [auth Q]	Beta-Casp	e9ivsQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
N [auth R]	Beta-Casp	e9ivsR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
M [auth T]	Beta-Casp	e9ivsT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
J [auth O]	Beta-Casp	e9ivsO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
I [auth M]	Beta-Casp	e9ivsM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
H [auth N]	Beta-Casp	e9ivsN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
G [auth P]	Beta-Casp	e9ivsP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
D [auth B]	Beta-Casp	e9ivsB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
C [auth D]	Beta-Casp	e9ivsD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
B [auth C]	Beta-Casp	e9ivsC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)
A	Beta-Casp	e9ivsA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Beta-Casp	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	Polyprotein P1234	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity mRNA methyltransferase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity mRNA methyltransferase activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity phosphoric ester hydrolase activity phosphatase activity mRNA 5'-triphosphate monophosphatase activity hydrolase activity, acting on ester bonds polynucleotide 5'-phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides adenyl ribonucleotide binding adenyl nucleotide binding ATP binding ribonucleoside triphosphate phosphatase activity poly(A) RNA polymerase activity adenylyltransferase activity nucleic acid conformation isomerase activity isomerase activity helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity cation binding metal ion binding	symbiont-mediated suppression of host transcription symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression symbiont-mediated perturbation of host transcription modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process symbiont-mediated suppression of host transcription symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression symbiont-mediated perturbation of host transcription modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process symbiont-mediated suppression of host gene expression mRNA modification mRNA metabolic process RNA modification macromolecule modification gene expression DNA-templated transcription 7-methylguanosine mRNA capping 7-methylguanosine RNA capping RNA capping mRNA processing RNA 5'-end processing RNA processing proteolysis protein metabolic process	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular membrane-bounded organelle host intracellular part host cell cytoplasmic vesicle membrane host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell cytoplasm host intracellular region host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular membrane-bounded organelle host intracellular part host cell cytoplasmic vesicle membrane host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell cytoplasm host intracellular region host cell filopodium host cell projection host cell nucleus
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	Ras GTPase-activating protein-binding protein 1	nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity ATP-dependent activity, acting on DNA DNA/RNA helicase activity catalytic activity, acting on DNA catalytic activity macromolecular conformation isomerase activity molecular condensate scaffold activity protein-macromolecule adaptor activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity ATP-dependent activity, acting on DNA DNA/RNA helicase activity catalytic activity, acting on DNA catalytic activity macromolecular conformation isomerase activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity DNA helicase activity RNA binding binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding mRNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides RNA helicase activity endonuclease activity nuclease activity ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus cellular response to stimulus biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus cellular response to stimulus regulation of biological process small GTPase-mediated signal transduction regulation of cellular process signaling Ras protein signal transduction biological regulation intracellular signal transduction cell communication intracellular signaling cassette cellular process signal transduction cellular component biogenesis cellular component organization organelle organization cellular component assembly organelle assembly cytoplasmic stress granule assembly membraneless organelle assembly cellular component organization or biogenesis defense response to virus response to virus multicellular organismal process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process positive regulation of type I interferon production type I interferon production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process regulation of type I interferon production	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction somatodendritic compartment cell body perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction somatodendritic compartment cell body perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR048891	Non-structural protein 3, zinc-binding domain	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR002589	Macro domain	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR001788	RNA-dependent RNA polymerase, alsuviricetes	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR002588	Alphavirus-like methyltransferase domain	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR043472	Macro domain-like	Homologous Superfamily
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR044936	Alphavirus nsP2 protease domain superfamily	Homologous Superfamily
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR049329	Tomato mosaic virus helicase, N-terminal domain	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR044371	Non-structural protein 3, X-domain-like	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR027351	(+) RNA virus helicase core domain	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR002620	Alphavirus nsp2, protease domain	Domain
E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], E [auth L], F [auth I], K [auth V], L [auth U], Q [auth X], R [auth W], W [auth J], X [auth K]	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR039539	Ras GTPase-activating protein-binding protein	Family
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR000504	RNA recognition motif domain	Domain
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR018222	Nuclear transport factor 2, eukaryote	Domain
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR034374	G3BP1, RNA recognition motif	Domain
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	IPR002075	Nuclear transport factor 2 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth D], D [auth B], G [auth P], A, B [auth C], C [auth D], D [auth B], G [auth P], H [auth N], I [auth M], J [auth O], M [auth T], N [auth R], O [auth Q], P [auth S], S [auth E], T [auth G], U [auth H], V [auth F]	: Q13283	Sjogren syndrome astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor gastric cancer hepatocellular carcinoma lung adenocarcinoma medulloblastoma ovarian cancer Sjogren syndrome astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor gastric cancer hepatocellular carcinoma lung adenocarcinoma medulloblastoma ovarian cancer psoriasis ulcerative colitis breast cancer gastric carcinoma IgA glomerulonephritis lymphoplasmacytic lymphoma myopathy pancreatic intraductal papillary-mucinous carcinoma