9IFM | pdb_00009ifm

STRUCTURE OF UNSTACKED C2S2-TYPE PSII-LHCII SUPERCOMPLEX FROM PISUM SATIVUM


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098298 3000736 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098298 3000736 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8098290 3001674 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098290 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098294 3000736 SCOP2B (2022-06-29)
CA [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098294 3000736 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8098498 3001602 SCOP2B (2022-06-29)
DA [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8098498 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8098832 3001602 SCOP2B (2022-06-29)
EA [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8098832 3001602 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
MA [auth n]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
FA [auth g]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8100730 3001547 SCOP2B (2022-06-29)
GA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8100730 3001547 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8097600 3001590 SCOP2B (2022-06-29)
HA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8097600 3001590 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8098500 3001534 SCOP2B (2022-06-29)
IA [auth j]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8098500 3001534 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8097598 3001585 SCOP2B (2022-06-29)
JA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8097598 3001585 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098790 3001523 SCOP2B (2022-06-29)
KA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098790 3001523 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098916 3001573 SCOP2B (2022-06-29)
LA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098916 3001573 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyOMPA barrel-like 8098512 3000208 SCOP2B (2022-06-29)
NA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8098512 3000208 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyMog1p/PsbP-like 8098524 3000396 SCOP2B (2022-06-29)
OA [auth p]SCOP2B SuperfamilyMog1p/PsbP-like 8098524 3000396 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyPsbQ-like 8100022 3000169 SCOP2B (2022-06-29)
PA [auth q]SCOP2B SuperfamilyPsbQ-like 8100022 3000169 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyChlorophyll a-b binding protein 8096646 3000343 SCOP2B (2022-06-29)
QA [auth r]SCOP2B SuperfamilyChlorophyll a-b binding protein 8096646 3000343 SCOP2B (2022-06-29)
W [auth Y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076974 3000343 SCOP2B (2022-06-29)
VA [auth y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076974 3000343 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyPsbZ-like 8099370 3001624 SCOP2B (2022-06-29)
WA [auth z]SCOP2B SuperfamilyPsbZ-like 8099370 3001624 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
AA [auth b],
B
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
PA [auth q],
Q
PF05757Oxygen evolving enhancer protein 3 (PsbQ)Oxygen evolving enhancer protein 3- Family
RA [auth s],
S
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
Z [auth a]
Photosystem II protein D1
AA [auth b],
B
Photosystem II CP47 reaction center protein
BA [auth c],
C
Photosystem II CP43 reaction center protein
CA [auth d],
D
Photosystem II D2 protein
DA [auth e],
E
Cytochrome b559 subunit alpha
EA [auth f],
F
Cytochrome b559 subunit beta
FA [auth g],
G,
MA [auth n],
N
Chlorophyll a-b binding protein 8, chloroplastic
GA [auth h],
H
Photosystem II reaction center protein H
HA [auth i],
I
Photosystem II reaction center protein I-
IA [auth j],
J
Photosystem II reaction center protein J-
JA [auth k],
K
Photosystem II reaction center protein K-
KA [auth l],
L
Photosystem II reaction center protein L-
LA [auth m],
M
Photosystem II reaction center protein M-
NA [auth o],
O
Oxygen-evolving enhancer protein 1, chloroplastic
OA [auth p],
P
Oxygen-evolving enhancer protein 2, chloroplastic
PA [auth q],
Q
Oxygen-evolving enhancer protein 3
QA [auth r],
R
Chlorophyll a-b binding protein, chloroplastic
RA [auth s],
S
Chlorophyll a-b binding protein, chloroplastic
SA [auth t],
T
Photosystem II reaction center protein T-
TA [auth w],
U [auth W]
Photosystem II reaction center protein W-
UA [auth x],
V [auth X]
Ultraviolet-B-repressible protein-
VA [auth y],
W [auth Y]
Chlorophyll a-b binding protein AB80, chloroplastic
WA [auth z],
X [auth Z]
Photosystem II reaction center protein Z-
XA [auth u],
Y [auth U]
Photosystem II 5 kDa protein, chloroplastic- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
Z [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
Z [auth a]
IPR005867Photosystem II protein D1Family
A,
Z [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
A,
Z [auth a]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
Z [auth a]
IPR055266Photosystem II protein D1/D2Family
AA [auth b],
B
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
AA [auth b],
B
IPR000932Photosystem antenna protein-likeFamily
AA [auth b],
B
IPR017486Photosystem II CP47 reaction centre proteinFamily
BA [auth c],
C
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
BA [auth c],
C
IPR000932Photosystem antenna protein-likeFamily
BA [auth c],
C
IPR005869Photosystem II CP43 reaction centre proteinFamily
BA [auth c],
C
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
CA [auth d],
D
IPR005868Photosystem II D2Family
CA [auth d],
D
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
CA [auth d],
D
IPR000484Photosynthetic reaction centre, L/MFamily
CA [auth d],
D
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
CA [auth d],
D
IPR055266Photosystem II protein D1/D2Family
DA [auth e],
E
IPR013081Photosystem II cytochrome b559, N-terminalDomain
DA [auth e],
E
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
DA [auth e],
E
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
DA [auth e],
E
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
DA [auth e],
E
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
EA [auth f],
F
IPR006241Photosystem II cytochrome b559, beta subunitFamily
EA [auth f],
F
IPR013081Photosystem II cytochrome b559, N-terminalDomain
EA [auth f],
F
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
FA [auth g],
G,
MA [auth n],
N
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
FA [auth g],
G,
MA [auth n],
N
IPR022796Chlorophyll A-B binding proteinFamily
GA [auth h],
H
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
GA [auth h],
H
IPR001056Photosystem II reaction centre protein HFamily
HA [auth i],
I
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
HA [auth i],
I
IPR003686Photosystem II PsbIFamily
IA [auth j],
J
IPR002682Photosystem II PsbJFamily
IA [auth j],
J
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
JA [auth k],
K
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
JA [auth k],
K
IPR003687Photosystem II PsbKFamily
KA [auth l],
L
IPR003372Photosystem II PsbLFamily
KA [auth l],
L
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
LA [auth m],
M
IPR007826Photosystem II PsbMFamily
LA [auth m],
M
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
NA [auth o],
O
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
NA [auth o],
O
IPR002628Photosystem II extrinsic protein OFamily
OA [auth p],
P
IPR002683PsbP, C-terminalDomain
OA [auth p],
P
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
PA [auth q],
Q
IPR008797Oxygen-evolving enhancer protein 3Family
PA [auth q],
Q
IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
PA [auth q],
Q
IPR023222PsbQ-like domain superfamilyHomologous Superfamily
QA [auth r],
R
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
QA [auth r],
R
IPR022796Chlorophyll A-B binding proteinFamily
RA [auth s],
S
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
RA [auth s],
S
IPR022796Chlorophyll A-B binding proteinFamily
SA [auth t],
T
IPR001743Photosystem II PsbTFamily
SA [auth t],
T
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
TA [auth w],
U [auth W]
IPR009806Photosystem II PsbW, class 2Family
UA [auth x],
V [auth X]
IPR009518Photosystem II PsbXFamily
UA [auth x],
V [auth X]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
VA [auth y],
W [auth Y]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
VA [auth y],
W [auth Y]
IPR022796Chlorophyll A-B binding proteinFamily
WA [auth z],
X [auth Z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
WA [auth z],
X [auth Z]
IPR002644Photosystem II PsbZ, reaction centreFamily
XA [auth u],
Y [auth U]
IPR040296Photosystem II 5kDa protein, chloroplasticFamily