9IC2 | pdb_00009ic2

Structure of AMPK-alpha2-kinase domain bound to BAY-3827

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062360	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FlgI	e9ic2A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FlgI	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	5'-AMP-activated protein kinase catalytic subunit alpha-2	protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity AMP-activated protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity AMP-activated protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine/tyrosine kinase activity chromatin binding protein serine kinase activity histone H2B kinase activity histone H2BS36 kinase activity histone modifying activity histone kinase activity	regulation of biological process catabolic process regulation of cellular process macroautophagy autophagy biological regulation regulation of catabolic process regulation of autophagy regulation of macroautophagy cellular process metabolic process process utilizing autophagic mechanism regulation of metabolic process cellular response to stimulus regulation of biological process catabolic process regulation of cellular process macroautophagy autophagy biological regulation regulation of catabolic process regulation of autophagy regulation of macroautophagy cellular process metabolic process process utilizing autophagic mechanism regulation of metabolic process cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress response to starvation cellular response to glucose starvation cellular response to starvation cellular component organization cellular component disassembly organelle organization organelle disassembly lipid droplet disassembly lipid droplet organization cellular component organization or biogenesis negative regulation of hepatocyte apoptotic process regulation of epithelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death epithelial cell apoptotic process negative regulation of apoptotic process regulation of hepatocyte apoptotic process negative regulation of epithelial cell apoptotic process hepatocyte apoptotic process negative regulation of cellular process apoptotic process programmed cell death response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to oxidative stress cellular response to chemical stress cellular response to metal ion response to metal ion cellular response to calcium ion response to calcium ion negative regulation of signaling signaling negative regulation of intracellular signal transduction regulation of signal transduction negative regulation of cell communication intracellular signal transduction cell communication negative regulation of TOR signaling regulation of intracellular signal transduction signal transduction TOR signaling regulation of signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication positive regulation of autophagy positive regulation of biological process positive regulation of catabolic process positive regulation of metabolic process positive regulation of cellular process chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process regulation of primary metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process regulation of purine nucleotide catabolic process positive regulation of nucleotide catabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process pyridine-containing compound metabolic process small molecule metabolic process regulation of nucleobase-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process regulation of carbohydrate catabolic process positive regulation of phosphorus metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process positive regulation of ATP metabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of phosphorus metabolic process regulation of nucleotide catabolic process positive regulation of carbohydrate metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration ATP metabolic process energy derivation by oxidation of organic compounds positive regulation of nucleotide metabolic process positive regulation of purine nucleotide catabolic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process positive regulation of glycolytic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process positive regulation of purine nucleotide metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process positive regulation of small molecule metabolic process purine ribonucleoside diphosphate catabolic process regulation of lipid metabolic process lipid metabolic process biosynthetic process lipid biosynthetic process rhythmic process circadian rhythm regulation of circadian rhythm response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular homeostasis response to monosaccharide response to carbohydrate response to glucose cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus regulation of cellular component organization organelle assembly membraneless organelle assembly regulation of cytoplasmic stress granule assembly regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis cellular component assembly cytoplasmic stress granule assembly regulation of organelle assembly multicellular organismal process multicellular organismal-level homeostasis energy homeostasis regulation of cytoskeleton organization microtubule cytoskeleton organization regulation of microtubule-based process microtubule-based process regulation of microtubule cytoskeleton organization cytoskeleton organization cell surface receptor signaling pathway response to endogenous stimulus adiponectin-activated signaling pathway response to cytokine hormone-mediated signaling pathway cytokine-mediated signaling pathway response to peptide cellular response to endogenous stimulus response to hormone cellular response to cytokine stimulus cellular response to hormone stimulus fatty acid homeostasis lipid homeostasis localization protein localization to organelle macromolecule localization protein localization to lipid droplet intracellular protein localization positive regulation of macroautophagy regulation of localization regulation of protein localization positive regulation of protein localization negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling regulation of biosynthetic process negative regulation of metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection endomembrane system endoplasmic reticulum lumen endoplasmic reticulum cell body neuronal cell body axon cilium ciliary basal body microtubule organizing center cytoskeleton microtubule cytoskeleton cytoplasmic ribonucleoprotein granule cytoplasmic stress granule endosome intracellular vesicle cytoplasmic vesicle late endosome vesicle protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex intracellular protein-containing complex nucleotide-activated protein kinase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000719	Protein kinase domain	Domain
A	IPR028375	KA1 domain/Ssp2, C-terminal	Homologous Superfamily
A	IPR049020	PRKAA1/2, autoinhibitory domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR039148	5'-AMP-activated protein kinase catalytic subunit alpha-2, C-terminal	Domain
A	IPR032270	AMPK, C-terminal adenylate sensor domain	Domain
A	IPR028783	PRKAA2, UBA-like autoinhibitory domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P54646	cardiomyopathy Cardiomegaly glucose intolerance malignant glioma gastric adenocarcinoma heart disease interstitial cystitis lung carcinoma oligodendroglioma astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma atypical teratoid rhabdoid tumor cardiomyopathy Cardiomegaly glucose intolerance malignant glioma gastric adenocarcinoma heart disease interstitial cystitis lung carcinoma oligodendroglioma astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma atypical teratoid rhabdoid tumor cerebrovascular disorder lung cancer