9GYT | pdb_00009gyt

High resolution structure of B. oleracea mitoribosome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
S [auth R]	SCOP2B Superfamily	Ribosomal protein S19	8095341	3000686	SCOP2B (2022-06-29)
TB [auth 1h]	SCOP2B Superfamily	Ribosomal protein L36	8093966	3001346	SCOP2B (2022-06-29)
ZA [auth 1N]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8095347	3000884	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
S [auth R]	PF00076	RNA recognition motif (RRM_1)	RNA recognition motif	The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...	The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.	Domain
S [auth R]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19		Domain
TA [auth 1H]	PF00444	Ribosomal protein L36 (Ribosomal_L36)	Ribosomal protein L36		Domain
AB [auth 1O]	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family
BB [auth 1P]	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	-	Family
FB [auth 1T]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
G [auth F]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
JB [auth 1X]	PF14693	Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)	Ribosomal protein TL5, C-terminal domain	This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...	This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.	Domain
JB [auth 1X]	PF01386	Ribosomal L25p family (Ribosomal_L25p)	Ribosomal L25p family	Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.	Domain
F [auth E]	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6		Domain
CB [auth 1Q]	PF01245	Ribosomal protein L19 (Ribosomal_L19)	Ribosomal protein L19	-	Family
ZA [auth 1N]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e		Domain
XA [auth 1L]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e		Domain
E [auth D]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain		Domain
E [auth D]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain		Domain
WA [auth 1K]	PF05047	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain	The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...	The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.	Domain
WA [auth 1K]	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family
SA [auth 1G]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6		Domain
RA [auth 1F]	PF00468	Ribosomal protein L34 (Ribosomal_L34)	Ribosomal protein L34	-	Family
NA [auth 1B]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain		Domain
C [auth B]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
T [auth S]	PF01165	Ribosomal protein S21 (Ribosomal_S21)	Ribosomal protein S21	-	Family
B [auth A]	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
P [auth O]	PF00886	Ribosomal protein S16 (Ribosomal_S16)	Ribosomal protein S16	-	Family
O [auth N]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15		Domain
M [auth L]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
J [auth I]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 3]	5S rRNA	-	-	-
N [auth M]	uS14m	-	-	-
Q [auth P]	uS17m	-	-	-
S [auth R]	Small ribosomal subunit protein uS19m	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
V [auth U]	mS23	-	-	-
Y [auth X]	mS31/mS46	-	-	-
AA [auth Z]	mS34	-	-	-
CA [auth b]	mS37	-	-	-
GA [auth f]	mS47	-	-	-
LA [auth k]	mS86	-	-	-
TA [auth 1H]	bL9m	-	-	-
YA [auth 1M]	uL15m	-	-	-
AB [auth 1O]	50S ribosomal protein L17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
BB [auth 1P]	Ribosomal protein L18e/L15P domain-containing protein	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
FB [auth 1T]	Large ribosomal subunit protein uL22m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
GB [auth 1U]	uL23m	-	-	-
HB [auth 1V]	uL24m	-	-	-
NB [auth 1b]	uL30m	-	-	-
OB [auth 1c]	bL31m	-	-	-
PB [auth 1d]	bL32m	-	-	-
QB [auth 1e]	bL33m	-	-	-
RB [auth 1f]	Large ribosomal subunit protein bL34m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
DC [auth 1s]	mL87	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
FC [auth 1u]	mL102 (rPPR5)	-	-	-
I [auth H]	uS9m	-	-	-
IC [auth 2]	18S rRNA	-	-	-
HC [auth 1]	26S rRNA	-	-	-
GC [auth 1v]	mL104 (rPPR9)	-	-	-
EC [auth 1t]	mL101 (rPPR4)	-	-	-
CC [auth 1r]	mL80	-	-	-
BC [auth 1q]	mL60	-	-	-
H [auth G]	uS8m	-	-	-
AC [auth 1p]	mL59/mL64	-	-	-
ZB [auth 1o]	mL54	-	-	-
YB [auth 1m]	mL53	-	-	-
XB [auth 1l]	mL46	-	-	-
WB [auth 1k]	Large ribosomal subunit protein mL43	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
VB [auth 1j]	mL41	-	-	-
UB [auth 1i]	mL40	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
TB [auth 1h]	Ribosomal protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle ribosome
SB [auth 1g]	bL35m	-	-	-
G [auth F]	uS7m,Small ribosomal subunit protein uS7m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
MB [auth 1a]	uL29m	-	-	-
LB [auth 1Z]	bL28m	-	-	-
KB [auth 1Y]	50S ribosomal protein L27	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
JB [auth 1X]	bL25m	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
IB [auth 1W]	bL25-2m	-	-	-
F [auth E]	bS6m	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
EB [auth 1S]	bL21m	-	-	-
DB [auth 1R]	bL20m	-	-	-
CB [auth 1Q]	bL19m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
ZA [auth 1N]	Large ribosomal subunit protein uL16m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
XA [auth 1L]	uL14m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
E [auth D]	S5 DRBM domain-containing protein	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
WA [auth 1K]	50S ribosomal protein L13	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
VA [auth 1J]	uL11m	-	-	-
UA [auth 1I]	uL10m	-	-	-
SA [auth 1G]	Large ribosomal subunit protein uL6 alpha-beta domain-containing protein	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
RA [auth 1F]	uL5m	-	-	-
QA [auth 1E]	uL4m	-	-	-
PA [auth 1D]	uL3m	-	-	-
OA [auth 1C]	uL2m N-ter mitochondrial	-	-	-
NA [auth 1B]	Large ribosomal subunit protein uL2 C-terminal domain-containing protein	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
D [auth C]	uS4m	-	-	-
MA [auth l]	Small ribosomal subunit protein mS80 (rPPR6)	RNA binding binding nucleic acid binding mRNA binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex membraneless organelle intracellular membraneless organelle ribosome
KA [auth j]	mS76 (rPPR1)	-	-	-
JA [auth i]	PROP1-like PPR domain-containing protein	-	-	-
IA [auth h]	mS83 (rPPR10)	-	-	-
HA [auth g]	Small ribosomal subunit protein mS81 (rPPR8)	RNA binding binding nucleic acid binding mRNA binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex membraneless organelle intracellular membraneless organelle ribosome
FA [auth e]	mS45	-	multi-multicellular organism process multicellular organismal process pollination reproductive process pollen germination regulation of biological process regulation of cellular process biological regulation cellular process regulation of programmed cell death cell death programmed cell death developmental process reproductive system development multi-multicellular organism process multicellular organismal process pollination reproductive process pollen germination regulation of biological process regulation of cellular process biological regulation cellular process regulation of programmed cell death cell death programmed cell death developmental process reproductive system development embryo development developmental process involved in reproduction multicellular organism development fruit development embryo development ending in seed dormancy seed development anatomical structure development reproductive structure development post-embryonic development system development anatomical structure morphogenesis cellularization anatomical structure formation involved in morphogenesis endosperm cellularization cell communication mitochondrial membrane organization membrane organization cellular component organization organelle organization cellular component organization or biogenesis mitochondrion organization glucan biosynthetic process regulation of starch biosynthetic process regulation of glucan biosynthetic process regulation of polysaccharide metabolic process regulation of primary metabolic process polysaccharide metabolic process glucan metabolic process regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process biosynthetic process regulation of starch metabolic process starch metabolic process regulation of polysaccharide biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of carbohydrate biosynthetic process starch biosynthetic process regulation of metabolic process gene expression regulation of gene expression gametophyte development pollen development vacuole organization pollen tube development endosperm development tissue development localization organelle localization nucleus localization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
EA [auth d]	mS41	-	-	-
DA [auth c]	mS38	-	-	-
C [auth B]	Small ribosomal subunit protein uS3m	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex membraneless organelle intracellular membraneless organelle ribosome
BA [auth a]	mS35	-	-	-
Z [auth Y]	mS33	-	-	-
X [auth W]	Small ribosomal subunit protein mS29	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
W [auth V]	mS26	-	-	-
U [auth T]	30S ribosomal protein S31, mitochondrial	-	primary metabolic process plastid translation translation gene expression protein biosynthetic process macromolecule biosynthetic process cellular component organization organelle organization plastid organization biosynthetic process cellular process metabolic process cellular component organization or biogenesis protein metabolic process primary metabolic process plastid translation translation gene expression protein biosynthetic process macromolecule biosynthetic process cellular component organization organelle organization plastid organization biosynthetic process cellular process metabolic process cellular component organization or biogenesis protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle ribosome
T [auth S]	Ribosomal protein S21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
B [auth A]	Ribosomal protein S2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
R [auth Q]	bS18m	-	-	-
P [auth O]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit ribonucleoprotein complex membraneless organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit ribonucleoprotein complex membraneless organelle ribosome plastid chloroplast
O [auth N]	Small ribosomal subunit protein uS15c	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle ribosome
M [auth L]	uS13m	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit ribonucleoprotein complex membraneless organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit ribonucleoprotein complex membraneless organelle ribosome
L [auth K]	uS12m	-	-	-
K [auth J]	uS11m	-	-	-
J [auth I]	Small ribosomal subunit protein uS10 domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
S [auth R]	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
S [auth R]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
S [auth R]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
S [auth R]	IPR000504	RNA recognition motif domain	Domain
S [auth R]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
S [auth R]	IPR002222	Small ribosomal subunit protein uS19	Family
S [auth R]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
S [auth R]	IPR048289	NsCP33-like, RNA recognition motif 2	Domain
AB [auth 1O]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
AB [auth 1O]	IPR000456	Large ribosomal subunit protein bL17	Family
BB [auth 1P]	IPR005484	Large ribosomal subunit protein uL18, bacterial/plantae/animalia	Family
BB [auth 1P]	IPR057268	Large ribosomal subunit protein uL18	Family
FB [auth 1T]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
FB [auth 1T]	IPR001063	Large ribosomal subunit protein uL22	Family
FB [auth 1T]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
FB [auth 1T]	IPR047867	Large ribosomal subunit protein uL22, bacteria/organella	Family
RB [auth 1f]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
RB [auth 1f]	IPR000271	Large ribosomal subunit protein bL34	Family
WB [auth 1k]	IPR007741	Ribosomal protein/NADH dehydrogenase domain	Domain
WB [auth 1k]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
WB [auth 1k]	IPR039927	Large ribosomal subunit protein mL43	Family
UB [auth 1i]	IPR039145	Large ribosomal subunit protein mL40, metazoa/plants	Family
TB [auth 1h]	IPR000473	Large ribosomal subunit protein bL36	Family
TB [auth 1h]	IPR052010	Ribosomal Large Subunit bL36	Family
TB [auth 1h]	IPR035977	Large ribosomal subunit protein bL36 superfamily	Homologous Superfamily
G [auth F]	IPR034643	Mitochondrial ribosomal protein S7, plants	Family
G [auth F]	IPR000235	Small ribosomal subunit protein uS7	Family
G [auth F]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
G [auth F]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
G [auth F]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
KB [auth 1Y]	IPR001684	Large ribosomal subunit protein bL27	Family
KB [auth 1Y]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
JB [auth 1X]	IPR011035	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Homologous Superfamily
JB [auth 1X]	IPR029751	Large ribosomal subunit protein bL25, L25 domain	Domain
JB [auth 1X]	IPR037121	Large ribosomal subunit protein bL25, C-terminal	Homologous Superfamily
JB [auth 1X]	IPR020057	Large ribosomal subunit protein bL25, beta domain	Domain
JB [auth 1X]	IPR020056	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal	Homologous Superfamily
JB [auth 1X]	IPR020930	Large ribosomal subunit protein uL5, bacteria	Family
F [auth E]	IPR000529	Small ribosomal subunit protein bS6	Family
F [auth E]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F [auth E]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
CB [auth 1Q]	IPR001857	Large ribosomal subunit protein bL19	Family
CB [auth 1Q]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
CB [auth 1Q]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
ZA [auth 1N]	IPR000114	Large ribosomal subunit protein uL16, bacteria	Family
ZA [auth 1N]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
ZA [auth 1N]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
ZA [auth 1N]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
ZA [auth 1N]	IPR047873	Large ribosomal subunit protein uL16	Family
XA [auth 1L]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
XA [auth 1L]	IPR000218	Large ribosomal subunit protein uL14	Family
XA [auth 1L]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
XA [auth 1L]	IPR005745	Large ribosomal subunit protein uL14, bacteria	Family
E [auth D]	IPR000851	Small ribosomal subunit protein uS5	Family
E [auth D]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E [auth D]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E [auth D]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth D]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
WA [auth 1K]	IPR005822	Large ribosomal subunit protein uL13	Family
WA [auth 1K]	IPR005823	Large ribosomal subunit protein uL13, bacteria	Family
WA [auth 1K]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
SA [auth 1G]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
SA [auth 1G]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
SA [auth 1G]	IPR000702	Large ribosomal subunit protein uL6-like	Family
SA [auth 1G]	IPR019906	Large ribosomal subunit protein uL6, bacteria	Family
SA [auth 1G]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
NA [auth 1B]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
NA [auth 1B]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
NA [auth 1B]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
NA [auth 1B]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
NA [auth 1B]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
NA [auth 1B]	IPR002171	Large ribosomal subunit protein uL2	Family
MA [auth l]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
MA [auth l]	IPR002885	Pentatricopeptide repeat	Repeat
JA [auth i]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
JA [auth i]	IPR002885	Pentatricopeptide repeat	Repeat
JA [auth i]	IPR033443	PROP1-like, PPR domain	Domain
HA [auth g]	IPR044578	Pentatricopeptide repeat-containing protein BIR6-like	Family
HA [auth g]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
HA [auth g]	IPR002885	Pentatricopeptide repeat	Repeat
FA [auth e]	IPR052851	GAMETE CELL DEFECTIVE 1 mitochondrial	Family
C [auth B]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
C [auth B]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
C [auth B]	IPR044954	Small ribosomal subunit protein uS3m, plant	Family
C [auth B]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
X [auth W]	IPR019368	Small ribosomal subunit protein mS29	Family
U [auth T]	IPR044695	Small ribosomal subunit protein bTHXc/bTHXc, plant	Family
U [auth T]	IPR030826	Small ribosomal subunit protein bTHX/bTHXc/bTHXm	Family
T [auth S]	IPR001911	Small ribosomal subunit protein bS21	Family
B [auth A]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
B [auth A]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
B [auth A]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
B [auth A]	IPR001865	Small ribosomal subunit protein uS2	Family
P [auth O]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
P [auth O]	IPR000307	Small ribosomal subunit protein bS16	Family
O [auth N]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
O [auth N]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
O [auth N]	IPR000589	Small ribosomal subunit protein uS15	Family
M [auth L]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
M [auth L]	IPR001892	Small ribosomal subunit protein uS13	Family
M [auth L]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
M [auth L]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
J [auth I]	IPR001848	Small ribosomal subunit protein uS10	Family
J [auth I]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
J [auth I]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily