9GI1 | pdb_00009gi1

Structure of the S.aureus MecA/ClpC/ClpP degradation system

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth Pa]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
B [auth Pb]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
C [auth Pc]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
D [auth Pd]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
E [auth Pe]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
F [auth Pf]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
G [auth Pg]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
H [auth Ph]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
I [auth Pi]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
J [auth Pl]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
K [auth Pm]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
L [auth Pn]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
M [auth Po]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
N [auth Pq]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process proteolysis metabolic process cellular process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex
O [auth S]	Unidentified substrate of the MecA-ClpC-ClpP complex from S.aureus	-	-	-
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	ATP-dependent Clp protease ATP-binding subunit ClpC	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	response to copper ion response to stimulus response to metal ion response to chemical response to stress stress response to copper ion stress response to metal ion stress response to cadmium ion response to cadmium ion	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR018215	ClpP, Ser active site	Active Site
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR033135	ClpP, histidine active site	Active Site
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR001270	ClpA/B family	Family
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR018368	ClpA/B, conserved site 1	Conserved Site
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR041546	ClpA/ClpB, AAA lid domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR004176	Clp, repeat (R) N-terminal domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR028299	ClpA/B, conserved site 2	Conserved Site
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR003593	AAA+ ATPase domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR003959	ATPase, AAA-type, core	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR001943	UVR domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR019489	Clp ATPase, C-terminal	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.