9G6V | pdb_00009g6v

Dissociated FMDV SAT2 Pentamer in complex with ultralong Fab117

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth A],
M [auth E],
N [auth I],
O [auth M],
P [auth Q]		Fab117 Heavy Chain---
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		Genome polyprotein
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		Genome polyprotein
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		Genome polyprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR015031Capsid protein VP4, PicornavirusDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR001676Picornavirus capsidDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR004080Foot-and-mouth disease virus VP1 coatDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 3],
E [auth D],
G [auth H],
I [auth L],
K [auth P]		IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR015031Capsid protein VP4, PicornavirusDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR001676Picornavirus capsidDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR004080Foot-and-mouth disease virus VP1 coatDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth 2],
Q [auth C],
R [auth G],
S [auth K],
T [auth O]		IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR015031Capsid protein VP4, PicornavirusDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR001676Picornavirus capsidDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR004080Foot-and-mouth disease virus VP1 coatDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A [auth 1],
D [auth B],
F,
H [auth J],
J [auth N]		IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily