9G33 | pdb_00009g33

Stalled 90S - Utp23-Krr1-deltaC3

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth JF]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
I [auth JG]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
S [auth UM]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)
W [auth CF]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
X [auth CG]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
FA [auth DF]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
KA [auth DE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
KA [auth DE]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
KA [auth DE]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
MA [auth DW]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
NA [auth DG]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
RA [auth DQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
QA [auth Dc]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
OA [auth DL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
OA [auth DL]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
GA [auth DI]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
K [auth CA]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
L [auth CB]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth CJ]PF04427Brix domain (Brix)Brix domainDomain
G [auth DY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
H [auth UX]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
I [auth JG],
J [auth JF]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
N [auth UC]PF09368Sas10 C-terminal domain (Sas10)Sas10 C-terminal domainSas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit. Domain
O [auth UE]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
S [auth UM]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
W [auth CF],
X [auth CG]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Y [auth CI]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
Y [auth CI]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
BA [auth JJ]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
FA [auth DF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
HA [auth DJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
KA [auth DE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
KA [auth DE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
KA [auth DE]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
KA [auth DE]PF00467KOW motif (KOW)KOW motif- Family
MA [auth DW]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
NA [auth DG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
PA [auth CH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
RA [auth DQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
VA [auth UF]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
VA [auth UF]PF05843Suppressor of forked protein (Suf) (Suf)Suppressor of forked protein (Suf)- Repeat
WA [auth UG]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
WA [auth UG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
YA [auth JO]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
YA [auth JO]PF21800KRR1 small subunit processome component, second KH domain (KH_KRR1_2nd)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences. Domain
ZA [auth CM]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
ZA [auth CM]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
BB [auth JP]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
BB [auth JP]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CB [auth UR]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DB [auth UU]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
DB [auth UU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EB [auth UD]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FB [auth UQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
IB [auth UJ]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
IB [auth UJ]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
JB [auth DH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
KB [auth UT]PF20416U3 small nucleolar RNA-associated protein 20 domain (UTP20)U3 small nucleolar RNA-associated protein 20 domain- Repeat
KB [auth UT]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
LB [auth JA],
MB [auth JB]		PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
LB [auth JA],
MB [auth JB]		PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminalThis domain of unknown function is often found at the N-terminal of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acet ...This domain of unknown function is often found at the N-terminal of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acetyl donor and either ATP or GTP [1,2,5]. This modification is thought to ensure precise recognition of the AUG codon by strengthening C-G base-pair interaction and also prevent misrecognition of the near cognate AUA codon [1]. This domain is also found in mammalian N-acetyltransferase 10 (NAT10) and fungal protein Kre33. Kre33 and NAT10 are RNA cytosine acetyltransferases with specificity toward both 18S rRNA and tRNAs and contain additional putative nuclear and nucleolar localisation signals (NLS and NoLS respectively) [3,4,5].
Domain
LB [auth JA],
MB [auth JB]		PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
LB [auth JA],
MB [auth JB]		PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
F [auth CL]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
F [auth CL]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
GB [auth UA]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
GB [auth UA]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
AB [auth UZ]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
TA [auth CD]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
TA [auth CD]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
SA [auth CE]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
SA [auth CE]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
OA [auth DL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
OA [auth DL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
IA [auth DS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
GA [auth DI]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
EA [auth JQ]PF17075Regular of rDNA transcription protein 14 (RRT14)Regular of rDNA transcription protein 14- Family
V [auth US]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
T [auth UO]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
T [auth UO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
R [auth UL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
R [auth UL]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Q [auth UK]PF03998Utp11 protein (Utp11)Utp11 protein- Family
K [auth CA],
L [auth CB]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth D2]5' ETS---
D [auth CJ]U3 small nucleolar ribonucleoprotein protein IMP4
G [auth DY]40S ribosomal protein S24-A
H [auth UX]rRNA-processing protein FCF1
I [auth JG],
J [auth JF]		Ribosomal RNA small subunit methyltransferase NEP1
M [auth UB]Nucleolar complex protein 14
N [auth UC]Something about silencing protein 10
O [auth UE]U3 small nucleolar RNA-associated protein 5-
P [auth UH]U3 small nucleolar RNA-associated protein 8
S [auth UM]U3 small nucleolar RNA-associated protein 13
U [auth UP]U3 small nucleolar RNA-associated protein 16
W [auth CF],
X [auth CG]		13 kDa ribonucleoprotein-associated protein
Y [auth CI]U3 small nucleolar ribonucleoprotein protein IMP3
AA [auth JH]Essential nuclear protein 1
BA [auth JJ]Pre-rRNA-processing protein PNO1
DA [auth JM]rRNA-processing protein FCF2-
FA [auth DF]40S ribosomal protein S5
HA [auth DJ]40S ribosomal protein S9-A
KA [auth DE]40S ribosomal protein S4-A
LA [auth DX]40S ribosomal protein S23-A
MA [auth DW]40S ribosomal protein S22-A
NA [auth DG]40S ribosomal protein S6-A
PA [auth CH]Ribosomal RNA-processing protein 9
RA [auth DQ]40S ribosomal protein S16-A
UA [auth UN]U3 small nucleolar RNA-associated protein 14
VA [auth UF]U3 small nucleolar RNA-associated protein 6
WA [auth UG]U3 small nucleolar RNA-associated protein 7-
YA [auth JO]KRR1 small subunit processome component
ZA [auth CM]RNA 3'-terminal phosphate cyclase-like protein
BB [auth JP]Protein SOF1
CB [auth UR]U3 small nucleolar RNA-associated protein 18-
DB [auth UU]U3 small nucleolar RNA-associated protein 21-
EB [auth UD]U3 small nucleolar RNA-associated protein 4-
FB [auth UQ]NET1-associated nuclear protein 1
IB [auth UJ]U3 small nucleolar RNA-associated protein 10
JB [auth DH]40S ribosomal protein S7-A
KB [auth UT]U3 small nucleolar RNA-associated protein 20
LB [auth JA],
MB [auth JB]		RNA cytidine acetyltransferase
F [auth CL]Ribosome biogenesis protein BMS1
HB [auth UI]U3 small nucleolar RNA-associated protein 9
GB [auth UA]Periodic tryptophan protein 2
AB [auth UZ]Ribosome biogenesis protein UTP30
E [auth CK]U3 small nucleolar RNA-associated protein MPP10
XA [auth JN]Protein FAF1-
TA [auth CD]Nucleolar protein 56
SA [auth CE]Nucleolar protein 58
QA [auth Dc]40S ribosomal protein S28-A
OA [auth DL]40S ribosomal protein S11-A
JA [auth JC]Ribosome biogenesis protein ENP2-
IA [auth DS]40S ribosomal protein S18-A
GA [auth DI]40S ribosomal protein S8-A
C [auth D4]U3 snoRNA---
EA [auth JQ]Regulator of rDNA transcription protein 14- -
CA [auth JK]Protein BFR2-
Z [auth JE]U3 small nucleolar ribonucleoprotein protein LCP5-
V [auth US]Nucleolar complex protein 4-
T [auth UO]U3 small nucleolar RNA-associated protein 15
R [auth UL]U3 small nucleolar RNA-associated protein 12
Q [auth UK]U3 small nucleolar RNA-associated protein 11-
K [auth CA],
L [auth CB]		rRNA 2'-O-methyltransferase fibrillarin
A [auth D3]18S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth CJ]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
D [auth CJ]IPR007109Brix domainDomain
G [auth DY]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
G [auth DY]IPR001976Small ribosomal subunit protein eS24Family
G [auth DY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
G [auth DY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
H [auth UX]IPR002716PIN domainDomain
H [auth UX]IPR006984Fcf1/UTP23Family
H [auth UX]IPR029060PIN-like domain superfamilyHomologous Superfamily
H [auth UX]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
I [auth JG],
J [auth JF]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
I [auth JG],
J [auth JF]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
I [auth JG],
J [auth JF]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
M [auth UB]IPR007276Nucleolar protein 14Family
N [auth UC]IPR018972Sas10 C-terminal domainDomain
N [auth UC]IPR007146Sas10/Utp3/C1DFamily
O [auth UE]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
O [auth UE]IPR007148Small-subunit processome, Utp12Domain
O [auth UE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
O [auth UE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth UH]IPR053881Utp8, C-terminalDomain
P [auth UH]IPR018843Utp8, beta-propellerDomain
S [auth UM]IPR019775WD40 repeat, conserved siteConserved Site
S [auth UM]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
S [auth UM]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
S [auth UM]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
S [auth UM]IPR001680WD40 repeatRepeat
S [auth UM]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth UP]IPR013268U3 small nucleolar RNA-associated protein 16Family
W [auth CF],
X [auth CG]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
W [auth CF],
X [auth CG]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
W [auth CF],
X [auth CG]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
W [auth CF],
X [auth CG]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
W [auth CF],
X [auth CG]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
W [auth CF],
X [auth CG]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
Y [auth CI]IPR002942RNA-binding S4 domainDomain
Y [auth CI]IPR022801Small ribosomal subunit protein uS4Family
Y [auth CI]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
Y [auth CI]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AA [auth JH]IPR007955BystinFamily
BA [auth JJ]IPR041174KRR1 small subunit processome component, first KH domainDomain
BA [auth JJ]IPR055212PNO1, first type I KH domainDomain
BA [auth JJ]IPR055211PNO1, second type I KH domainDomain
BA [auth JJ]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
DA [auth JM]IPR039883Fcf2/DNTTIP2Family
DA [auth JM]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
FA [auth DF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
FA [auth DF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
FA [auth DF]IPR000235Small ribosomal subunit protein uS7Family
FA [auth DF]IPR023798Small ribosomal subunit protein uS7 domainDomain
FA [auth DF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
HA [auth DJ]IPR002942RNA-binding S4 domainDomain
HA [auth DJ]IPR022801Small ribosomal subunit protein uS4Family
HA [auth DJ]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
HA [auth DJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
HA [auth DJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HA [auth DJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KA [auth DE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
KA [auth DE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
KA [auth DE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
KA [auth DE]IPR002942RNA-binding S4 domainDomain
KA [auth DE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
KA [auth DE]IPR000876Small ribosomal subunit protein eS4Family
KA [auth DE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
KA [auth DE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
KA [auth DE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
KA [auth DE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KA [auth DE]IPR005824KOWDomain
LA [auth DX]IPR006032Small ribosomal subunit protein uS12Family
LA [auth DX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth DX]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
MA [auth DW]IPR000630Small ribosomal subunit protein uS8Family
MA [auth DW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
MA [auth DW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
NA [auth DG]IPR014401Small ribosomal subunit protein eS6-likeFamily
NA [auth DG]IPR001377Small ribosomal subunit protein eS6Family
NA [auth DG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
PA [auth CH]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
PA [auth CH]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
PA [auth CH]IPR001680WD40 repeatRepeat
PA [auth CH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
RA [auth DQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
RA [auth DQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
RA [auth DQ]IPR000754Small ribosomal subunit protein uS9Family
RA [auth DQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
UA [auth UN]IPR006709Small-subunit processome, Utp14Family
VA [auth UF]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
VA [auth UF]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
VA [auth UF]IPR003107HAT (Half-A-TPR) repeatRepeat
VA [auth UF]IPR013949U3 small nucleolar RNA-associated protein 6Family
WA [auth UG]IPR019775WD40 repeat, conserved siteConserved Site
WA [auth UG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
WA [auth UG]IPR012952BING4, C-terminal domainDomain
WA [auth UG]IPR001680WD40 repeatRepeat
WA [auth UG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
WA [auth UG]IPR040315WD repeat-containing protein WDR46/Utp7Family
YA [auth JO]IPR041174KRR1 small subunit processome component, first KH domainDomain
YA [auth JO]IPR024166Ribosomal RNA assembly KRR1Family
YA [auth JO]IPR004087K Homology domainDomain
YA [auth JO]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
YA [auth JO]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
YA [auth JO]IPR048548KRR1 small subunit processome component, second KH domainDomain
YA [auth JO]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
ZA [auth CM]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
ZA [auth CM]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
ZA [auth CM]IPR000228RNA 3'-terminal phosphate cyclaseFamily
ZA [auth CM]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
ZA [auth CM]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
ZA [auth CM]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
ZA [auth CM]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
ZA [auth CM]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
BB [auth JP]IPR051733WD repeat-containing DCAF13/WDSOF1Family
BB [auth JP]IPR007287Sof1-like proteinDomain
BB [auth JP]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BB [auth JP]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
BB [auth JP]IPR001680WD40 repeatRepeat
BB [auth JP]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CB [auth UR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CB [auth UR]IPR001680WD40 repeatRepeat
CB [auth UR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CB [auth UR]IPR045161U3 small nucleolar RNA-associated protein 18Family
DB [auth UU]IPR019775WD40 repeat, conserved siteConserved Site
DB [auth UU]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DB [auth UU]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
DB [auth UU]IPR007319WDR36/Utp21, C-terminal domainDomain
DB [auth UU]IPR001680WD40 repeatRepeat
DB [auth UU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EB [auth UD]IPR046351U3 small nucleolar RNA-associated protein 4Family
EB [auth UD]IPR001680WD40 repeatRepeat
EB [auth UD]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EB [auth UD]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FB [auth UQ]IPR053826WD repeat-containing protein 75Family
FB [auth UQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FB [auth UQ]IPR001680WD40 repeatRepeat
FB [auth UQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IB [auth UJ]IPR016024Armadillo-type foldHomologous Superfamily
IB [auth UJ]IPR040191U3 small nucleolar RNA-associated protein 10Family
IB [auth UJ]IPR021133HEAT, type 2Repeat
IB [auth UJ]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
IB [auth UJ]IPR011989Armadillo-like helicalHomologous Superfamily
IB [auth UJ]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
IB [auth UJ]IPR012954BP28, C-terminal domainDomain
JB [auth DH]IPR000554Small ribosomal subunit protein eS7Family
JB [auth DH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
KB [auth UT]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
KB [auth UT]IPR016024Armadillo-type foldHomologous Superfamily
KB [auth UT]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
KB [auth UT]IPR011989Armadillo-like helicalHomologous Superfamily
KB [auth UT]IPR052575Small subunit processome component 20Family
LB [auth JA],
MB [auth JB]		IPR007807TcmA/NAT10, helicase domainDomain
LB [auth JA],
MB [auth JB]		IPR027992Possible tRNA binding domainDomain
LB [auth JA],
MB [auth JB]		IPR013562TmcA/NAT10, N-terminalDomain
LB [auth JA],
MB [auth JB]		IPR032672TmcA/NAT10/Kre33Family
LB [auth JA],
MB [auth JB]		IPR033688RNA cytidine acetyltransferase NAT10Family
LB [auth JA],
MB [auth JB]		IPR000182GNAT domainDomain
LB [auth JA],
MB [auth JB]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth CL]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
F [auth CL]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
F [auth CL]IPR003959ATPase, AAA-type, coreDomain
F [auth CL]IPR012948AARP2CNDomain
F [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth CL]IPR030387Bms1/Tsr1-type G domainDomain
F [auth CL]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
HB [auth UI]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GB [auth UA]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
GB [auth UA]IPR019775WD40 repeat, conserved siteConserved Site
GB [auth UA]IPR007148Small-subunit processome, Utp12Domain
GB [auth UA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GB [auth UA]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
GB [auth UA]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
GB [auth UA]IPR001680WD40 repeatRepeat
GB [auth UA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GB [auth UA]IPR027145Periodic tryptophan protein 2Family
AB [auth UZ]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
AB [auth UZ]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
AB [auth UZ]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
E [auth CK]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
XA [auth JN]IPR053030Ribosomal biogenesis protein FAF1-likeFamily
TA [auth CD]IPR042239Nop, C-terminal domainHomologous Superfamily
TA [auth CD]IPR012974Nucleolar protein 58/56, N-terminalDomain
TA [auth CD]IPR002687Nop domainDomain
TA [auth CD]IPR012976NOSICDomain
TA [auth CD]IPR036070Nop domain superfamilyHomologous Superfamily
TA [auth CD]IPR045056Nucleolar protein Nop56/Nop58Family
SA [auth CE]IPR042239Nop, C-terminal domainHomologous Superfamily
SA [auth CE]IPR012974Nucleolar protein 58/56, N-terminalDomain
SA [auth CE]IPR002687Nop domainDomain
SA [auth CE]IPR012976NOSICDomain
SA [auth CE]IPR036070Nop domain superfamilyHomologous Superfamily
SA [auth CE]IPR045056Nucleolar protein Nop56/Nop58Family
QA [auth Dc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
QA [auth Dc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
QA [auth Dc]IPR000289Small ribosomal subunit protein eS28Family
OA [auth DL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
OA [auth DL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
OA [auth DL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OA [auth DL]IPR000266Small ribosomal subunit protein uS17Family
OA [auth DL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
JA [auth JC]IPR001680WD40 repeatRepeat
JA [auth JC]IPR056550Nucleolar protein 10-like, second domainDomain
JA [auth JC]IPR040382Nucleolar protein 10/Enp2Family
JA [auth JC]IPR012580NUC153Domain
JA [auth JC]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
JA [auth JC]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth JC]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth DS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IA [auth DS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IA [auth DS]IPR001892Small ribosomal subunit protein uS13Family
IA [auth DS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
GA [auth DI]IPR001047Small ribosomal subunit protein eS8Family
GA [auth DI]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
GA [auth DI]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
GA [auth DI]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
EA [auth JQ]IPR031404Regulator of rDNA transcription 14Family
CA [auth JK]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
CA [auth JK]IPR025160AATF leucine zipper-containing domainDomain
CA [auth JK]IPR039223Protein AATF/Bfr2Family
Z [auth JE]IPR007146Sas10/Utp3/C1DFamily
V [auth US]IPR027193Nucleolar complex protein 4Family
V [auth US]IPR005612CCAAT-binding factorDomain
T [auth UO]IPR019775WD40 repeat, conserved siteConserved Site
T [auth UO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
T [auth UO]IPR001680WD40 repeatRepeat
T [auth UO]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
T [auth UO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth UL]IPR019775WD40 repeat, conserved siteConserved Site
R [auth UL]IPR007148Small-subunit processome, Utp12Domain
R [auth UL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth UL]IPR051570TBC1 domain family involved in cilium biogenesisFamily
R [auth UL]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
R [auth UL]IPR001680WD40 repeatRepeat
R [auth UL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth UK]IPR007144Small-subunit processome, Utp11Family
K [auth CA],
L [auth CB]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
K [auth CA],
L [auth CB]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
K [auth CA],
L [auth CB]		IPR020813Fibrillarin, conserved siteConserved Site