PF30S-PF30S dimer mediated by aRDF from P. furiosus (Structure II)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| NA [auth BD] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053209 | 3002166 | SCOP2B (2022-06-29) |
| I [auth AD] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053209 | 3002166 | SCOP2B (2022-06-29) |
| LA [auth BB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063808 | 3001397 | SCOP2B (2022-06-29) |
| G [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063808 | 3001397 | SCOP2B (2022-06-29) |
| JA [auth B5] | SCOP2B Superfamily | L30e-like | 8033057 | 3001739 | SCOP2B (2022-06-29) |
| E [auth A5] | SCOP2B Superfamily | L30e-like | 8033057 | 3001739 | SCOP2B (2022-06-29) |
| IB [auth BY] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8063782 | 3001320 | SCOP2B (2022-06-29) |
| DA [auth AY] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8063782 | 3001320 | SCOP2B (2022-06-29) |
| HB [auth BX] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8088663 | 3001320 | SCOP2B (2022-06-29) |
| CA [auth AX] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8088663 | 3001320 | SCOP2B (2022-06-29) |
| GB [auth BW] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082571 | 3000210 | SCOP2B (2022-06-29) |
| BA [auth AW] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082571 | 3000210 | SCOP2B (2022-06-29) |
| Y [auth AT] | SCOP2B Superfamily | Rps17e-like | 8063510 | 3001852 | SCOP2B (2022-06-29) |
| DB [auth BT] | SCOP2B Superfamily | Rps17e-like | 8063510 | 3001852 | SCOP2B (2022-06-29) |
| W [auth AR] | SCOP2B Superfamily | Homeodomain-like | 8052955 | 3000001 | SCOP2B (2022-06-29) |
| W [auth AR] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052956 | 3001284 | SCOP2B (2022-06-29) |
| BB [auth BR] | SCOP2B Superfamily | Homeodomain-like | 8052955 | 3000001 | SCOP2B (2022-06-29) |
| BB [auth BR] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052956 | 3001284 | SCOP2B (2022-06-29) |
| V [auth AQ] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052588 | 3000068 | SCOP2B (2022-06-29) |
| AB [auth BQ] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052588 | 3000068 | SCOP2B (2022-06-29) |
| ZA [auth BP] | SCOP2B Superfamily | S13-like H2TH domain | 8100260 | 3000053 | SCOP2B (2022-06-29) |
| U [auth AP] | SCOP2B Superfamily | S13-like H2TH domain | 8100260 | 3000053 | SCOP2B (2022-06-29) |
| XA [auth BN] | SCOP2B Superfamily | Translational machinery components | 8100262 | 3000571 | SCOP2B (2022-06-29) |
| S [auth AN] | SCOP2B Superfamily | Translational machinery components | 8100262 | 3000571 | SCOP2B (2022-06-29) |
| WA [auth BM] | SCOP2B Superfamily | Ribosomal protein S10 | 8098822 | 3001336 | SCOP2B (2022-06-29) |
| R [auth AM] | SCOP2B Superfamily | Ribosomal protein S10 | 8098822 | 3001336 | SCOP2B (2022-06-29) |
| VA [auth BL] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082675 | 3000100 | SCOP2B (2022-06-29) |
| Q [auth AL] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082675 | 3000100 | SCOP2B (2022-06-29) |
| UA [auth BK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053085 | 3000433 | SCOP2B (2022-06-29) |
| P [auth AK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053085 | 3000433 | SCOP2B (2022-06-29) |
| TA [auth BJ] | SCOP2B Superfamily | Ribosomal protein S8 | 8079067 | 3000709 | SCOP2B (2022-06-29) |
| O [auth AJ] | SCOP2B Superfamily | Ribosomal protein S8 | 8079067 | 3000709 | SCOP2B (2022-06-29) |
| SA [auth BI] | SCOP2B Superfamily | Ribosomal protein S7 | 8065991 | 3000799 | SCOP2B (2022-06-29) |
| N [auth AI] | SCOP2B Superfamily | Ribosomal protein S7 | 8065991 | 3000799 | SCOP2B (2022-06-29) |
| RA [auth BH] | SCOP2B Superfamily | GS N-terminal domain-like | 8053162 | 3000408 | SCOP2B (2022-06-29) |
| M [auth AH] | SCOP2B Superfamily | GS N-terminal domain-like | 8053162 | 3000408 | SCOP2B (2022-06-29) |
| PA [auth BF] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052754 | 3000334 | SCOP2B (2022-06-29) |
| PA [auth BF] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052752 | 3001473 | SCOP2B (2022-06-29) |
| PA [auth BF] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052753 | 3000135 | SCOP2B (2022-06-29) |
| K [auth AF] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052752 | 3001473 | SCOP2B (2022-06-29) |
| K [auth AF] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052753 | 3000135 | SCOP2B (2022-06-29) |
| K [auth AF] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052754 | 3000334 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| J [auth AE], OA [auth BE] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| H [auth AC], MA [auth BC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| H [auth AC], MA [auth BC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| G [auth AB], LA [auth BB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| E [auth A5], JA [auth B5] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| EA [auth AZ], JB [auth BZ] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| DA [auth AY], IB [auth BY] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| BA [auth AW], GB [auth BW] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| AA [auth AV], FB [auth BV] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| EB [auth BU], Z [auth AU] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| CB [auth BS], X [auth AS] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| BB [auth BR], W [auth AR] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| AB [auth BQ], V [auth AQ] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| U [auth AP], ZA [auth BP] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| T [auth AO], YA [auth BO] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| S [auth AN], XA [auth BN] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| R [auth AM], WA [auth BM] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| Q [auth AL], VA [auth BL] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| P [auth AK], UA [auth BK] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| O [auth AJ], TA [auth BJ] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| N [auth AI], SA [auth BI] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| M [auth AH], RA [auth BH] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| L [auth AG], QA [auth BG] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| L [auth AG], QA [auth BG] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| K [auth AF], PA [auth BF] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| K [auth AF], PA [auth BF] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| K [auth AF], PA [auth BF] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| A [auth A1], FA [auth B1] | PF07754 | Small zinc finger protein HVO_2753-like, Zn-binding pocket (HVO_2753_ZBP) | Small zinc finger protein HVO_2753-like, Zn-binding pocket | This domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of ... | Domain |














