9F19 | pdb_00009f19

Human USP30 chimera in complex with NK036 inhibitor

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	WD40	e9f19B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
A	WD40	e9f19A01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00443	Ubiquitin carboxyl-terminal hydrolase (UCH)	Ubiquitin carboxyl-terminal hydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 14,Ubiquitin carboxyl-terminal hydrolase 35	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity ubiquitin-like protein peptidase activity deubiquitinase activity enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity ubiquitin-like protein peptidase activity deubiquitinase activity enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity K63-linked deubiquitinase activity cysteine-type deubiquitinase activity protein-containing complex binding binding proteasome binding	cellular response to stimulus regulation of cellular process catabolic process response to stimulus regulation of cellular response to stress negative regulation of biological process negative regulation of ERAD pathway regulation of response to endoplasmic reticulum stress macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process ERAD pathway cellular response to stress regulation of response to stress response to stress cellular response to stimulus regulation of cellular process catabolic process response to stimulus regulation of cellular response to stress negative regulation of biological process negative regulation of ERAD pathway regulation of response to endoplasmic reticulum stress macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process ERAD pathway cellular response to stress regulation of response to stress response to stress negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process response to endoplasmic reticulum stress negative regulation of macromolecule metabolic process regulation of ERAD pathway negative regulation of response to endoplasmic reticulum stress negative regulation of catabolic process regulation of biological process negative regulation of response to stimulus regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process regulation of response to stimulus negative regulation of proteasomal protein catabolic process response to chemical regulation of proteasomal protein catabolic process cellular process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process chemotaxis regulation of response to external stimulus response to external stimulus regulation of chemotaxis taxis regulation of locomotion locomotion regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process negative regulation of ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination protein modification by small protein removal macromolecule modification post-translational protein modification protein modification process protein K48-linked deubiquitination protein modification by small protein conjugation or removal defense response inflammatory response macroautophagy autophagy regulation of autophagy mitophagy regulation of autophagy of mitochondrion process utilizing autophagic mechanism negative regulation of autophagy of mitochondrion regulation of mitophagy negative regulation of mitophagy negative regulation of macroautophagy regulation of macroautophagy negative regulation of autophagy autophagy of mitochondrion organelle fusion cellular component organization organelle organization mitochondrial fusion cellular component organization or biogenesis mitochondrion organization protein K11-linked deubiquitination autophagy of peroxisome pexophagy protein K6-linked deubiquitination	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface intracellular anatomical structure cytoplasm cytosol presynapse extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface intracellular anatomical structure cytoplasm cytosol presynapse presynaptic cytosol synapse cell junction cell periphery plasma membrane membrane glutamatergic synapse intracellular organelle cytoplasmic vesicle intracellular vesicle intracellular membrane-bounded organelle mitochondrion mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane peroxisome microbody membrane peroxisomal membrane microbody

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR019954	Ubiquitin conserved site	Conserved Site
A, B	IPR044635	Ubiquitin carboxyl-terminal hydrolase 14-like	Family
A, B	IPR018200	Ubiquitin specific protease, conserved site	Conserved Site
A, B	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B	IPR000626	Ubiquitin-like domain	Domain
A, B	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Domain
A, B	IPR028889	Ubiquitin specific protease USP, catalytic domain	Domain
A, B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A, B	IPR050164	Ubiquitin carboxyl-terminal hydrolases	Family
A, B	IPR018200	Ubiquitin specific protease, conserved site	Conserved Site
A, B	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Domain
A, B	IPR028889	Ubiquitin specific protease USP, catalytic domain	Domain
A, B	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Domain
A, B	IPR028889	Ubiquitin specific protease USP, catalytic domain	Domain
A, B	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B	IPR049407	Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR050164	Ubiquitin carboxyl-terminal hydrolases	Family
A, B	IPR018200	Ubiquitin specific protease, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q9P2H5	astrocytic tumor malignant ependymoma ovarian cancer breast cancer malignant glioma pancreatic intraductal papillary-mucinous neoplasm lung cancer osteosarcoma psoriasis glioblastoma osteosarcoma spina bifida large cell medulloblastoma ovarian cancer tuberculosis astrocytic tumor malignant ependymoma ovarian cancer breast cancer malignant glioma pancreatic intraductal papillary-mucinous neoplasm lung cancer osteosarcoma psoriasis glioblastoma osteosarcoma spina bifida large cell medulloblastoma ovarian cancer tuberculosis medulloblastoma pancreatic ductal adenocarcinoma ulcerative colitis pituitary cancer testicular germ cell tumor

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.