9EWY | pdb_00009ewy

CryoEM structure of human MICAL1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8039125 3000068 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCalponin-homology domain, CH-domain 8084142 3000264 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMical/EHBP Rab binding (bMERB) domain-like 8092905 3002641 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00307Calponin homology (CH) domain (CH)Calponin homology (CH) domainThe CH domain is found in both cytoskeletal proteins and signal transduction proteins [1]. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its ac ...The CH domain is found in both cytoskeletal proteins and signal transduction proteins [1]. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity [4]. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin and Swiss:P15498 have only a single copy.
Domain
PF12130Bivalent Mical/EHBP Rab binding domain (bMERB_dom)Bivalent Mical/EHBP Rab binding domainA variety of different effector proteins interact specifically with GTP-bound Rab proteins and mediate their versatile roles in membrane trafficking, including budding of vesicles from a donor membrane, directed transport through the cell and finally ...A variety of different effector proteins interact specifically with GTP-bound Rab proteins and mediate their versatile roles in membrane trafficking, including budding of vesicles from a donor membrane, directed transport through the cell and finally tethering and fusion with a target membrane. The 'bivalent Mical/EHBP Rab binding' (bMERB) domain is a Rab effector domain that is present in proteins of the Mical and EHBP families, both known to act in endosomal trafficking. The bMERB domain displays a preference for Rab8 family proteins (Rab8, 10, 13 and 15) and at least some of the bMERB domains contain two separate binding sites for Rab-proteins, allowing Micals and EHBPs to bind two Rabs simultaneously. The strong similarity between the two binding sites within one bMRB domain strongly suggests an evolutionarily development via duplication of a common ancestor supersecondary structure element. The bMERB domain has a completely alpha-helical fold consisting of a central helix and N- and C-terminal helices folding back on this central helix [1].
Domain
PF01494FAD binding domain (FAD_binding_3)FAD binding domainThis domain is involved in FAD binding in a number of enzymes. Domain
PF00412LIM domain (LIM)LIM domainThis family represents two copies of the LIM structural domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
[F-actin]-monooxygenase MICAL1