| F [auth E] | IPR040961 | Cop9 signalosome subunit 5 C-terminal domain | Domain |
| F [auth E] | IPR050242 | JAMM/MPN+ metalloenzymes, peptidase M67A | Family |
| F [auth E] | IPR037518 | MPN domain | Domain |
| F [auth E] | IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain | Domain |
| IPR019954 | Ubiquitin conserved site | Conserved Site |
| IPR050158 | Ubiquitin and ubiquitin-like | Family |
| IPR038738 | Nedd8-like ubiquitin | Domain |
| IPR000626 | Ubiquitin-like domain | Domain |
| IPR019956 | Ubiquitin domain | Domain |
| IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
| H [auth G] | IPR045237 | Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7 | Family |
| H [auth G] | IPR041481 | COP9 signalosome complex subunit 7, helix I | Domain |
| H [auth G] | IPR000717 | Proteasome component (PCI) domain | Domain |
| G [auth F] | IPR024969 | EIF3F/CSN6-like, C-terminal | Domain |
| G [auth F] | IPR037518 | MPN domain | Domain |
| G [auth F] | IPR033859 | COP9 signalosome subunit 6 | Family |
| G [auth F] | IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain | Domain |
| E [auth D] | IPR041406 | COP9 signalosome complex subunit 4, helix turn helix domain | Domain |
| E [auth D] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
| E [auth D] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| E [auth D] | IPR000717 | Proteasome component (PCI) domain | Domain |
| E [auth D] | IPR040134 | 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4 | Family |
| E [auth D] | IPR054559 | PSMD12/CSN4-like, N-terminal | Domain |
| D [auth C] | IPR048621 | COP9 signalosome complex subunit 3, C-terminal helix | Domain |
| D [auth C] | IPR050756 | COP9 signalosome complex subunit 3 | Family |
| D [auth C] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| D [auth C] | IPR055089 | COP9 signalosome complex subunit 3, N-terminal helical repeats | Domain |
| D [auth C] | IPR000717 | Proteasome component (PCI) domain | Domain |
| C [auth A] | IPR048624 | COP9 signalosome complex subunit 1, C-terminal helix | Domain |
| C [auth A] | IPR019585 | 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1 | Family |
| C [auth A] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| C [auth A] | IPR000717 | Proteasome component (PCI) domain | Domain |
| C [auth A] | IPR045135 | 26S proteasome regulatory subunit Rpn7, N-terminal | Domain |
| B [auth H] | IPR033205 | COP9 signalosome, subunit CSN8 | Family |
| B [auth H] | IPR033464 | CSN8/PSMD8/EIF3K | Domain |
| B [auth H] | IPR000717 | Proteasome component (PCI) domain | Domain |
| A [auth B] | IPR050871 | 26S Proteasome and COP9 Signalosome Components | Family |
| A [auth B] | IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
| A [auth B] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| A [auth B] | IPR000717 | Proteasome component (PCI) domain | Domain |