Annotations: 9E1T

CryoEM structure of LARGE1 bound to UDP-GlcA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SAM_2	e9e1tB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: SAM_2	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13896	Glycosyl-transferase for dystroglycan (Glyco_transf_49)	Glycosyl-transferase for dystroglycan	This glycosyl-transferase brings about the glycosylation of the alpha-dystroglycan subunit. Dystroglycan is an integral member of the skeletal muscular dystrophin glycoprotein complex, which links dystrophin to proteins in the extracellular matrix [1 ...	This glycosyl-transferase brings about the glycosylation of the alpha-dystroglycan subunit. Dystroglycan is an integral member of the skeletal muscular dystrophin glycoprotein complex, which links dystrophin to proteins in the extracellular matrix [1,2].	Domain
A, B	PF01501	Glycosyl transferase family 8 (Glyco_transf_8)	Glycosyl transferase family 8	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Xylosyl- and glucuronyltransferase LARGE1	glycosyltransferase activity transferase activity catalytic activity UDP-glycosyltransferase activity glucuronosyltransferase activity hexosyltransferase activity cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding acetylglucosaminyltransferase activity glycosyltransferase activity transferase activity catalytic activity UDP-glycosyltransferase activity glucuronosyltransferase activity hexosyltransferase activity cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding acetylglucosaminyltransferase activity xylosyltransferase activity pentosyltransferase activity UDP-xylosyltransferase activity	cellular response to stimulus positive regulation of cell communication small GTPase-mediated signal transduction regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette cellular response to stimulus positive regulation of cell communication small GTPase-mediated signal transduction regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling Rac protein signal transduction biological regulation positive regulation of intracellular signal transduction regulation of Rac protein signal transduction positive regulation of Rac protein signal transduction regulation of response to stimulus regulation of cell communication cellular process positive regulation of small GTPase mediated signal transduction positive regulation of signaling regulation of localization cellular localization regulation of protein localization cellular component organization localization neuromuscular junction development receptor clustering synapse organization cellular component organization or biogenesis intracellular protein localization regulation of skeletal muscle acetylcholine-gated channel clustering regulation of receptor clustering postsynaptic membrane organization regulation of protein localization to membrane membrane organization postsynapse organization positive regulation of receptor clustering skeletal muscle acetylcholine-gated channel clustering positive regulation of protein localization to membrane localization within membrane protein localization to membrane positive regulation of skeletal muscle acetylcholine-gated channel clustering cell junction organization regulation of cellular localization macromolecule localization positive regulation of protein localization carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation via mannose protein O-linked glycosylation metabolic process protein metabolic process macromolecule metabolic process regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction amino sugar metabolic process N-acetylglucosamine metabolic process developmental process muscle structure development skeletal muscle organ development animal organ development anatomical structure development muscle organ development animal gross anatomical part developmental process tissue regeneration skeletal muscle tissue regeneration developmental growth growth regeneration muscle cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of muscle cell apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of muscle cell apoptotic process negative regulation of cellular process apoptotic process programmed cell death sphingolipid biosynthetic process glycolipid metabolic process glycosphingolipid metabolic process liposaccharide metabolic process lipid biosynthetic process glycolipid biosynthetic process sphingolipid metabolic process glycosphingolipid biosynthetic process lipid metabolic process cellular homeostasis homeostatic process muscle cell cellular homeostasis	cell periphery cellular anatomical structure plasma membrane membrane neuromuscular junction synapse cell junction membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle cell periphery cellular anatomical structure plasma membrane membrane neuromuscular junction synapse cell junction membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051292	Alpha-1,3-xylosyltransferase/Beta-1,3-glucuronyltransferase	Family
A, B	IPR002495	Glycosyl transferase, family 8	Family
A, B	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: O95461	muscular dystrophy-dystroglycanopathy type B6 muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A6 muscular dystrophy-dystroglycanopathy, type A amphetamine abuse congenital muscular dystrophy liver cancer Weight Gain liver neoplasm malignant colon neoplasm malignant mesothelioma muscle-eye-brain disease cataract psoriasis congenital disorder of glycosylation hydrolethalus syndrome muscular dystrophy-dystroglycanopathy type B6 muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A6 muscular dystrophy-dystroglycanopathy, type A amphetamine abuse congenital muscular dystrophy liver cancer Weight Gain liver neoplasm malignant colon neoplasm malignant mesothelioma muscle-eye-brain disease cataract psoriasis congenital disorder of glycosylation hydrolethalus syndrome lissencephaly spectrum disorders lung cancer malignant ependymoma medulloblastoma muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4 arthrogryposis osteosarcoma glioblastoma intellectual disability malignant glioma muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1 atypical teratoid rhabdoid tumor primitive neuroectodermal tumor cerebrovascular disorder cutaneous lupus erythematosus hydrocephalus large cell medulloblastoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.