9E09 | pdb_00009e09

Cryo-EM structure a single nucleosome (2) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth S]SCOP2B SuperfamilyCore histone-like 8067130 3001387 SCOP2B (2022-06-29)
C [auth O]SCOP2B SuperfamilyCore histone-like 8067130 3001387 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
B [auth N]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
E [auth Q]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
A [auth M]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth O],
G [auth S]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
A [auth M],
E [auth Q]
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth V]DNA (cytosine-5)-methyltransferase 3B
K [auth X]DNA (cytosine-5)-methyltransferase 3B
DNA (156-MER)---
DNA (156-MER)---
D [auth P],
H [auth T]
Histone H2B
C [auth O],
G [auth S]
Histone H2A
B [auth N],
F [auth R]
Histone H4
A [auth M],
E [auth Q]
Histone H3.2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth V]IPR040552DNMT3, cysteine rich ADD domain, GATA1-like zinc fingerDomain
L [auth V]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
L [auth V]IPR049554DNMT3, ADD domain, PHD zinc fingerDomain
L [auth V]IPR050390DNA Cytosine-5 MethyltransferaseFamily
L [auth V]IPR000313PWWP domainDomain
L [auth V]IPR030488DNA (cytosine-5)-methyltransferase 3B, ADD domainDomain
L [auth V]IPR018117DNA methylase, C-5 cytosine-specific, active siteActive Site
L [auth V]IPR001525C-5 cytosine methyltransferaseFamily
L [auth V]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
L [auth V]IPR025766ADD domainDomain
K [auth X]IPR040552DNMT3, cysteine rich ADD domain, GATA1-like zinc fingerDomain
K [auth X]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
K [auth X]IPR049554DNMT3, ADD domain, PHD zinc fingerDomain
K [auth X]IPR050390DNA Cytosine-5 MethyltransferaseFamily
K [auth X]IPR000313PWWP domainDomain
K [auth X]IPR030488DNA (cytosine-5)-methyltransferase 3B, ADD domainDomain
K [auth X]IPR018117DNA methylase, C-5 cytosine-specific, active siteActive Site
K [auth X]IPR001525C-5 cytosine methyltransferaseFamily
K [auth X]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
K [auth X]IPR025766ADD domainDomain
D [auth P],
H [auth T]
IPR009072Histone-foldHomologous Superfamily
D [auth P],
H [auth T]
IPR000558Histone H2BFamily
D [auth P],
H [auth T]
IPR007125Core Histone H2A/H2B/H3 domainDomain
D [auth P],
H [auth T]
IPR055333Histone H2B, conserved siteConserved Site
C [auth O],
G [auth S]
IPR009072Histone-foldHomologous Superfamily
C [auth O],
G [auth S]
IPR002119Histone H2AFamily
C [auth O],
G [auth S]
IPR007125Core Histone H2A/H2B/H3 domainDomain
C [auth O],
G [auth S]
IPR032454Histone H2A, C-terminal domainDomain
C [auth O],
G [auth S]
IPR032458Histone H2A conserved siteConserved Site
B [auth N],
F [auth R]
IPR009072Histone-foldHomologous Superfamily
B [auth N],
F [auth R]
IPR035425CENP-T/Histone H4, histone foldDomain
B [auth N],
F [auth R]
IPR001951Histone H4Family
B [auth N],
F [auth R]
IPR019809Histone H4, conserved siteConserved Site
B [auth N],
F [auth R]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
A [auth M],
E [auth Q]
IPR009072Histone-foldHomologous Superfamily
A [auth M],
E [auth Q]
IPR007125Core Histone H2A/H2B/H3 domainDomain
A [auth M],
E [auth Q]
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
L [auth V]PharosQ9UBC3
K [auth X]PharosQ9UBC3
D [auth P],
H [auth T]
PharosP06899
C [auth O],
G [auth S]
PharosP0C0S8
B [auth N],
F [auth R]
PharosP62805
A [auth M],
E [auth Q]
PharosQ71DI3