9DVA | pdb_00009dva

F-actin binding interface of alpha-E-catenin ABD (cadherin-catenin complex) and afadin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G	Afadin	cell adhesion molecule binding protein binding binding	multicellular organismal process multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells developmental process head development brain morphogenesis animal organ development brain development nervous system development multicellular organism development anatomical structure morphogenesis central nervous system development anatomical structure development multicellular organismal process multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells developmental process head development brain morphogenesis animal organ development brain development nervous system development multicellular organism development anatomical structure morphogenesis central nervous system development anatomical structure development animal organ morphogenesis system development regulation of biological process oligodendrocyte progenitor proliferation cell population proliferation regulation of cellular process cellular developmental process biological regulation neurogenesis gliogenesis regulation of cell population proliferation cell differentiation cellular process neural precursor cell proliferation regulation of oligodendrocyte progenitor proliferation regulation of neural precursor cell proliferation adherens junction organization cellular component organization cell junction maintenance cell junction organization cellular component maintenance adherens junction maintenance cellular component organization or biogenesis cell-cell junction organization cell-cell junction maintenance cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly pore complex assembly cellular response to stimulus response to stimulus signaling signal transduction cell communication cell adhesion cell-cell adhesion cell-cell adhesion mediated by cadherin glial cell differentiation radial glial cell differentiation forebrain development pallium development cerebral cortex development telencephalon development regulation of cellular component organization regulation of postsynapse assembly cell junction assembly regulation of synapse structure or activity synapse organization regulation of synapse assembly regulation of biological quality postsynapse organization postsynapse assembly regulation of postsynapse organization regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization synapse assembly localization establishment of protein localization cellular localization establishment of protein localization to membrane establishment of protein localization to plasma membrane localization within membrane establishment of localization macromolecule localization intracellular protein localization protein localization to cell junction epithelium development neuroepithelial cell differentiation columnar/cuboidal epithelial cell differentiation tissue development epithelial cell differentiation	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region apical part of cell cell-cell junction anchoring junction intracellular anatomical structure cytoplasm apical junction complex presynaptic active zone membrane presynaptic membrane presynapse presynaptic active zone adherens junction hippocampal mossy fiber to CA3 synapse protein-containing complex pore complex membrane protein complex
F, H	Catenin alpha-1	gamma-catenin binding protein binding binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding vinculin binding cell adhesion molecule binding cadherin binding structural molecule activity beta-catenin binding identical protein binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development system development neuroblast proliferation cell population proliferation cellular developmental process nervous system development generation of neurons neurogenesis cell differentiation cellular process neural precursor cell proliferation cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation smoothened signaling pathway cell communication signal transduction negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process extrinsic apoptotic signaling pathway in absence of ligand regulation of signaling negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway response to hormone response to endogenous stimulus response to chemical response to estrogen localization macromolecule localization intracellular protein localization cell adhesion cell-cell adhesion epithelial cell-cell adhesion regulation of integrin-mediated signaling pathway negative regulation of integrin-mediated signaling pathway integrin-mediated signaling pathway anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ morphogenesis positive regulation of cell communication positive regulation of signal transduction positive regulation of biological process positive regulation of extrinsic apoptotic signaling pathway in absence of ligand positive regulation of apoptotic signaling pathway positive regulation of response to stimulus positive regulation of cellular process positive regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway positive regulation of apoptotic process positive regulation of signaling negative regulation of neural precursor cell proliferation regulation of developmental process regulation of neuroblast proliferation cell development regulation of cell differentiation regulation of neurogenesis regulation of cell development negative regulation of neuroblast proliferation regulation of nervous system development negative regulation of neurogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation regulation of neural precursor cell proliferation negative regulation of cell population proliferation regulation of multicellular organismal development negative regulation of developmental process negative regulation of cell development regulation of cell population proliferation negative regulation of multicellular organismal process positive regulation of smoothened signaling pathway regulation of smoothened signaling pathway cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cellular component organization or biogenesis apical junction assembly cell-cell junction assembly cell-cell junction organization negative regulation of locomotion regulation of cell motility regulation of locomotion negative regulation of cell motility cell motility locomotion female gonad development female sex differentiation development of primary female sexual characteristics ovarian follicle development gap junction assembly establishment or maintenance of cell polarity cell projection organization neuron projection development regeneration response to axon injury neuron projection regeneration axon regeneration neuron differentiation cellular response to stress response to stress response to wounding plasma membrane bounded cell projection organization axon development neuron development cellular response to nitrogen compound response to alcohol response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to alcohol response to indole-3-methanol cellular response to indole-3-methanol regulation of localization regulation of protein localization regulation of protein localization to nucleus protein localization to nucleus negative regulation of protein localization to nucleus protein localization to organelle negative regulation of protein localization	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery plasma membrane cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery plasma membrane membrane protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane protein complex extrinsic component of membrane cell-cell junction apical junction complex adherens junction anchoring junction cell junction zonula adherens membrane raft plasma membrane raft caveola membrane microdomain flotillin complex plasma membrane region membrane-bounded organelle Golgi apparatus cytoplasm intracellular membrane-bounded organelle endomembrane system intercalated disc cell-cell contact zone nucleus acrosomal vesicle intracellular vesicle cytoplasmic vesicle secretory granule secretory vesicle vesicle
A, B, C, D, E	Actin, alpha skeletal muscle	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	cellular developmental process cellular component assembly involved in morphogenesis skeletal myofibril assembly cell development membraneless organelle assembly muscle cell differentiation cellular component organization cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation actin filament-based process cellular developmental process cellular component assembly involved in morphogenesis skeletal myofibril assembly cell development membraneless organelle assembly muscle cell differentiation cellular component organization cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation actin filament-based process anatomical structure development cellular component organization or biogenesis developmental process skeletal muscle thin filament assembly actin cytoskeleton organization actomyosin structure organization organelle assembly actin filament organization anatomical structure morphogenesis organelle organization myofibril assembly anatomical structure formation involved in morphogenesis cellular process striated muscle cell differentiation supramolecular fiber organization cytoskeleton organization myotube cell development skeletal muscle fiber development skeletal muscle tissue development animal organ development tissue development myotube differentiation striated muscle tissue development skeletal muscle organ development muscle tissue development muscle organ development	polymeric cytoskeletal fiber intracellular anatomical structure actin filament intracellular membraneless organelle actin cytoskeleton intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex striated muscle thin filament polymeric cytoskeletal fiber intracellular anatomical structure actin filament intracellular membraneless organelle actin cytoskeleton intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex striated muscle thin filament myofilament sarcomere contractile muscle fiber cytoplasm myofibril actin filament bundle actomyosin stress fiber contractile actin filament bundle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G	IPR002710	Dilute domain	Domain
G	IPR028842	Afadin	Family
G	IPR000159	Ras-associating domain	Domain
G	IPR008984	SMAD/FHA domain superfamily	Homologous Superfamily
G	IPR000253	Forkhead-associated (FHA) domain	Domain
G	IPR036034	PDZ superfamily	Homologous Superfamily
G	IPR037977	Afadin, cargo binding domain	Domain
G	IPR001478	PDZ domain	Domain
G	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
F, H	IPR001033	Alpha-catenin	Family
F, H	IPR036723	Alpha-catenin/vinculin-like superfamily	Homologous Superfamily
F, H	IPR006077	Vinculin/alpha-catenin	Family
F, H	IPR000633	Vinculin, conserved site	Conserved Site
A, B, C, D, E	IPR020902	Actin/actin-like conserved site	Conserved Site
A, B, C, D, E	IPR004001	Actin, conserved site	Conserved Site
A, B, C, D, E	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B, C, D, E	IPR004000	Actin family	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E	HIC	Parent Component: HIS RESID: AA0317 PSI-MOD : 1'-methyl-L-histidine MOD:00322

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.