Annotations: 9DOK

Cryo-EM structure of LptB2FG apo-II

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth F]	PCI	e9dokF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
C [auth G]	PCI	e9dokG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
B [auth A]	PCI	e9dokA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
A [auth B]	Gasdermin_C	e9dokB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gasdermin_C	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth F]	Lipopolysaccharide export system permease protein LptF	-	transmembrane transport localization transport cellular process establishment of localization lipopolysaccharide transport macromolecule localization lipid localization lipid transport carbohydrate derivative transport	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex
C [auth G]	Permease	-	transmembrane transport localization transport cellular process establishment of localization lipopolysaccharide transport macromolecule localization lipid localization lipid transport carbohydrate derivative transport	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex
A [auth B], B [auth A]	Lipopolysaccharide export system ATP-binding protein LptB	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	transmembrane transport localization transport cellular process establishment of localization	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth F]	IPR005495	Permease LptG/LptF-related	Family
D [auth F]	IPR030922	LPS export ABC transporter permease LptF	Family
C [auth G]	IPR030923	LPS export ABC transporter permease LptG	Family
C [auth G]	IPR005495	Permease LptG/LptF-related	Family
A [auth B], B [auth A]	IPR051120	ABC Transporter, Amino Acid and LPS Transport	Family
A [auth B], B [auth A]	IPR032823	Branched-chain amino acid ATP-binding cassette transporter, C-terminal	Domain
A [auth B], B [auth A]	IPR003593	AAA+ ATPase domain	Domain
A [auth B], B [auth A]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A [auth B], B [auth A]	IPR030921	LPS export ABC transporter, ATP-binding protein LptB	Family
A [auth B], B [auth A]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A [auth B], B [auth A]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9DOK | pdb_00009dok

Cryo-EM structure of LptB2FG apo-II

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage