Annotations: 9CCA

Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8036862	3001405	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Gasdermin_C	e9ccaG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gasdermin_C	ECOD (v295.2)
H	PCI	e9ccaH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
I	PCI	e9ccaI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
J	PCI	e9ccaJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
K	PCI	e9ccaK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
L	PCI	e9ccaL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
S	PCI	e9ccaS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
T	PCI	e9ccaT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
U	PCI	e9ccaU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
W	PCI	e9ccaW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
X	PCI	e9ccaX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
V	PCI	e9ccaV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
A	PCI	e9ccaA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
B	Gasdermin_C	e9ccaB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gasdermin_C	ECOD (v295.2)
C	PCI	e9ccaC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
D	PCI	e9ccaD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
E	PCI	e9ccaE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
F	PCI	e9ccaF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
M	PCI	e9ccaM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
N	PCI	e9ccaN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
O	PCI	e9ccaO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
P	PCI	e9ccaP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
Q	PCI	e9ccaQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
R	PCI	e9ccaR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	PF01174	SNO glutamine amidotransferase family (SNO)	SNO glutamine amidotransferase family	This family and its amidotransferase domain was first described in [1]. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical ...	This family and its amidotransferase domain was first described in [1]. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of Pfam:PF01174 and Pfam:PF01680 [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	Circumsporozoite protein,Pyridoxal 5'-phosphate synthase subunit PDX2	host cell surface binding binding protein binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides glutaminase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds amine-lyase activity lyase activity pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity host cell surface binding binding protein binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides glutaminase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds amine-lyase activity lyase activity pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity carbon-nitrogen lyase activity	biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell viral process viral life cycle entry into host cell by a symbiont-containing vacuole response to oxidative stress response to singlet oxygen response to stimulus response to stress response to chemical response to oxygen-containing compound biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell viral process viral life cycle entry into host cell by a symbiont-containing vacuole response to oxidative stress response to singlet oxygen response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species vitamin B6 biosynthetic process water-soluble vitamin biosynthetic process small molecule biosynthetic process pyridine-containing compound biosynthetic process vitamin biosynthetic process vitamin metabolic process biosynthetic process pyridine-containing compound metabolic process vitamin B6 metabolic process metabolic process cellular process small molecule metabolic process pyridoxine metabolic process pyridoxal 5'-phosphate biosynthetic process aldehyde biosynthetic process aldehyde metabolic process organophosphate metabolic process organophosphate biosynthetic process pyridoxal 5'-phosphate metabolic process phosphorus metabolic process	cell surface cellular anatomical structure cell periphery plasma membrane membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex catalytic complex glutaminase complex
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	Circumsporozoite protein,Pyridoxal 5'-phosphate synthase subunit Pdx1	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides glutaminase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds amine-lyase activity lyase activity pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity carbon-nitrogen lyase activity identical protein binding protein binding binding host cell surface binding heparan sulfate proteoglycan binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides glutaminase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds amine-lyase activity lyase activity pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity carbon-nitrogen lyase activity identical protein binding protein binding binding host cell surface binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding	pyridoxal 5'-phosphate biosynthetic process vitamin B6 biosynthetic process water-soluble vitamin biosynthetic process small molecule biosynthetic process pyridine-containing compound biosynthetic process vitamin biosynthetic process aldehyde biosynthetic process aldehyde metabolic process vitamin metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process pyridine-containing compound metabolic process metabolic process pyridoxal 5'-phosphate biosynthetic process vitamin B6 biosynthetic process water-soluble vitamin biosynthetic process small molecule biosynthetic process pyridine-containing compound biosynthetic process vitamin biosynthetic process aldehyde biosynthetic process aldehyde metabolic process vitamin metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process pyridine-containing compound metabolic process metabolic process cellular process vitamin B6 metabolic process small molecule metabolic process pyridoxal 5'-phosphate metabolic process phosphorus metabolic process response to oxidative stress response to singlet oxygen response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species pyridoxine biosynthetic process pyridoxine metabolic process biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell viral process viral life cycle entry into host cell by a symbiont-containing vacuole	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell surface cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR051860	Plasmodium_CSP_Invasion	Unknown
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR003067	Plasmodium circumsporozoite protein	Family
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR029062	Class I glutamine amidotransferase-like	Homologous Superfamily
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR002161	Pyridoxal 5'-phosphate synthase subunit PdxT/SNO	Family
G, H, I, J, K G, H, I, J, K, L, S, T, U, V, W, X	IPR021196	PdxT/SNO family, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR001852	Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ	Family
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR033755	PdxS/SNZ N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR011060	Ribulose-phosphate binding barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR051860	Plasmodium_CSP_Invasion	Unknown
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR003067	Plasmodium circumsporozoite protein	Family
A, B, C, D, E A, B, C, D, E, F, M, N, O, P, Q, R	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily