9CBC | pdb_00009cbc

Yersinia entomophaga holotoxin complex in pore conformation

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
Q	PF18807	Tripartite Tc toxins repeat (TTc_toxin_rep)	Tripartite Tc toxins repeat	-	Family
P	PF12256	Insecticide toxin TcdB middle/N-terminal region (TcdB_toxin_midN)	Insecticide toxin TcdB middle/N-terminal region	-	Repeat
P	PF12255	Insecticide toxin TcdB middle/C-terminal region (TcdB_toxin_midC)	Insecticide toxin TcdB middle/C-terminal region	-	Family
P	PF03534	Salmonella virulence plasmid 65kDa B protein (SpvB)	Salmonella virulence plasmid 65kDa B protein	-	Family
C, F, I, L, O	PF00704	Glycosyl hydrolases family 18 (Glyco_hydro_18)	Glycosyl hydrolases family 18		Domain
B, E, H, K, N	PF20220	ABC toxin N-terminal region (ABC_toxin_N)	ABC toxin N-terminal region	-	Family
B, E, H, K, N	PF18276	Tc toxin complex TcA C-terminal TcB-binding domain (TcA_TcB_BD)	Tc toxin complex TcA C-terminal TcB-binding domain	This domain is found in the C-terminal region of the Tc toxin TcA, present in Photorhabdus luminescens. Tc Toxin complexes bind to the cell surface, are endocytosed and perforate the host endosomal membrane by forming channels that translocate toxic ...	This domain is found in the C-terminal region of the Tc toxin TcA, present in Photorhabdus luminescens. Tc Toxin complexes bind to the cell surface, are endocytosed and perforate the host endosomal membrane by forming channels that translocate toxic enzymes into the host. This domain is responsible for binding to toxin TcB. Binding of TcA to TcB/TcC opens the beta-propeller gate [1].	Domain
B, E, H, K, N	PF18413	Neuraminidase-like domain (Neuraminidase)	Neuraminidase-like domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Q	Toxin subunit YenC2	-	-	cellular anatomical structure extracellular region
P	Toxin subunit YenB	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region
C, F, I, L, O	Chitinase 2	chitin binding binding carbohydrate derivative binding chitinase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity endochitinase activity	carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process chitin metabolic process aminoglycan catabolic process macromolecule catabolic process glucosamine-containing compound catabolic process amino sugar catabolic process aminoglycan metabolic process amino sugar metabolic process metabolic process cellular process macromolecule metabolic process chitin catabolic process carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process chitin metabolic process aminoglycan catabolic process macromolecule catabolic process glucosamine-containing compound catabolic process amino sugar catabolic process aminoglycan metabolic process amino sugar metabolic process metabolic process cellular process macromolecule metabolic process chitin catabolic process carbohydrate metabolic process polysaccharide metabolic process polysaccharide catabolic process carbohydrate catabolic process primary metabolic process	cellular anatomical structure extracellular region
B, E, H, K, N	Toxin subunit YenA2	-	-	cellular anatomical structure extracellular region
A, D, G, J, M	Toxin subunit YenA1	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q	IPR050708	Type VI secretion system VgrG/RHS	Family
Q	IPR041508	Toxin complex C-like repeat	Repeat
Q	IPR022385	Rhs repeat-associated core	Domain
Q	IPR025968	YwqJ-like deaminase	Family
P	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
P	IPR003284	Salmonella virulence plasmid 65kDa B protein	Family
P	IPR022044	Insecticide toxin TcdB middle/C-terminal	Domain
P	IPR022045	Insecticide toxin TcdB middle/N-terminal	Domain
C, F, I, L, O	IPR011583	Chitinase II/V-like, catalytic domain	Domain
C, F, I, L, O	IPR029070	Chitinase insertion domain superfamily	Homologous Superfamily
C, F, I, L, O	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
C, F, I, L, O	IPR050314	Glycosyl Hydrolase Family 18	Family
C, F, I, L, O	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain
B, E, H, K, N	IPR041079	Neuraminidase-like domain	Domain
B, E, H, K, N	IPR040840	Tc toxin complex TcA, C-terminal TcB-binding domain	Domain
B, E, H, K, N	IPR046839	ABC toxin, N-terminal domain	Domain
A, D, G, J, M	IPR018003	Insecticidal toxin complex/plasmid virulence protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.