9C61 | pdb_00009c61

Crystal structure of the human LRRK2 WDR domain in complex with CACHE1193-26

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Non-specific serine/threonine protein kinase	small GTPase binding protein binding binding enzyme binding GTPase binding hydrolase activity catalytic activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity small GTPase binding protein binding binding enzyme binding GTPase binding hydrolase activity catalytic activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein kinase A binding identical protein binding guanyl nucleotide binding GTP binding guanyl ribonucleotide binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity GTP-dependent protein kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups signaling receptor complex adaptor activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus regulation of signaling regulation of biological process regulation of cellular process response to stimulus negative regulation of signaling signaling negative regulation of response to stimulus biological regulation negative regulation of biological process regulation of signal transduction negative regulation of signal transduction negative regulation of cell communication cell communication regulation of response to stimulus cellular response to stimulus regulation of signaling regulation of biological process regulation of cellular process response to stimulus negative regulation of signaling signaling negative regulation of response to stimulus biological regulation negative regulation of biological process regulation of signal transduction negative regulation of signal transduction negative regulation of cell communication cell communication regulation of response to stimulus negative regulation of cellular process regulation of cell communication cellular process signal transduction cell surface receptor signaling pathway regulation of Wnt signaling pathway regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway Wnt signaling pathway developmental process animal organ development anatomical structure development behavior multicellular organismal process exploration behavior intracellular signal transduction regulation of intracellular signal transduction catabolic process autophagy metabolic process process utilizing autophagic mechanism regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process regulation of protein metabolic process primary metabolic process regulation of primary metabolic process regulation of proteolysis proteolysis protein metabolic process cellular component organization cellular component biogenesis cellular component assembly Wnt signalosome assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis protein phosphorylation protein autophosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein modification process phosphorus metabolic process trans-synaptic signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine regulation of dopamine receptor signaling pathway response to catecholamine cellular response to catecholamine stimulus regulation of G protein-coupled receptor signaling pathway G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical G protein-coupled receptor signaling pathway regulation of biological quality regulation of membrane potential localization transport establishment of localization vesicle-mediated transport positive regulation of autophagy positive regulation of biological process regulation of catabolic process regulation of autophagy positive regulation of catabolic process positive regulation of metabolic process positive regulation of cellular process positive regulation of protein metabolic process positive regulation of macromolecule metabolic process cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation regulation of synapse structure or activity synapse organization dendritic spine morphogenesis system development dendritic spine development postsynapse organization dendritic spine organization regulation of cell projection organization regulation of postsynapse organization nervous system development generation of neurons regulation of neuron projection development regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis neurogenesis dendrite development regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of synapse organization cell junction organization neuron development regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization regulation of localization regulation of transport regulation of vesicle-mediated transport organelle organization endoplasmic reticulum organization endomembrane system organization protein localization to organelle macromolecule localization protein localization to endoplasmic reticulum exit site intracellular protein localization protein localization to endoplasmic reticulum regulation of multicellular organismal process Golgi organization	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body intracellular anatomical structure cytoplasm cytosol cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body intracellular anatomical structure cytoplasm cytosol cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle intracellular organelle organelle endoplasmic reticulum exit site endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system cytoskeleton membraneless organelle intracellular membraneless organelle Golgi membrane Golgi apparatus membrane bounding membrane of organelle organelle membrane mitochondrial membrane mitochondrion organelle outer membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane synapse intracellular vesicle transport vesicle membrane presynapse cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane cell junction vesicle transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle axon axon terminus distal axon terminal bouton neuron projection terminus phagocytic vesicle endocytic vesicle cell periphery plasma membrane membrane microdomain membrane raft lytic vacuole vacuole lysosome organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane protein-containing complex Wnt signalosome endosome organelle lumen membrane-enclosed lumen intracellular organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR032171	C-terminal of Roc, COR-A domain	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR051420	Ser/Thr Protein Kinases with Diverse Regulatory Roles	Family
A, B	IPR000719	Protein kinase domain	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR001611	Leucine-rich repeat	Repeat
A, B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR020859	Roc domain	Domain
A, B	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B	IPR056602	LRRK2, beta-propeller	Domain
A, B	IPR056597	LRRK2, ARM repeat domain	Domain
A, B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B	IPR005225	Small GTP-binding domain	Domain
A, B	IPR056593	LRRK2, ANK repeat domain	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B	IPR057263	C-terminal of Roc, COR-B domain	Domain
A, B	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B	IPR008271	Serine/threonine-protein kinase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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Crystal structure of the human LRRK2 WDR domain in complex with CACHE1193-26

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

9C61 | pdb_00009c61